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Clostridium perfringens str. 13 (cper0)
Gene : CPE2230
DDBJ      :CPE2230      probable serine proteinase Do
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  873/915 : Eukaryota  93/199 : Viruses  0/175   --->[See Alignment]
b.36.1b.47.1
:459 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   163->456 2zleA PDBj 3e-46 45.2 %
:RPS:PDB   5->74 3e7jA PDBj 5e-05 12.9 %
:RPS:PDB   196->354 3ee1A PDBj 8e-37 14.0 %
:RPS:PDB   345->452 2ehrA PDBj 6e-13 23.1 %
:RPS:SCOP  163->352 2bhgA1  b.47.1.4 * 2e-35 17.5 %
:RPS:SCOP  344->449 1nf3C  b.36.1.1 * 7e-14 13.2 %
:HMM:SCOP  155->364 1l1jA_ b.47.1.1 * 3.3e-63 49.5 %
:HMM:SCOP  342->452 1whdA_ b.36.1.1 * 1.2e-20 37.0 %
:RPS:PFM   387->444 PF00595 * PDZ 4e-05 39.7 %
:HMM:PFM   191->357 PF00089 * Trypsin 1.3e-23 30.7 166/219  
:HMM:PFM   383->443 PF00595 * PDZ 3.1e-09 27.6 58/81  
:BLT:SWISS 5->63 JIP5_DEBHA 2e-04 34.5 %
:BLT:SWISS 194->459 HTRA_LACHE 9e-58 46.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81936.1 GT:GENE CPE2230 GT:PRODUCT probable serine proteinase Do GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2551428..2552807) GB:FROM 2551428 GB:TO 2552807 GB:DIRECTION - GB:GENE CPE2230 GB:PRODUCT probable serine proteinase Do GB:NOTE 459 aa, similar to pir:A69643 serine proteinase Do, heat-shock protein htrA from Bacillus subtilis (449 aa); 45.2% identity in 321 aa overlap. 1 putative transmembrane region was found by PSORT heat-shock protein HtrA GB:PROTEIN_ID BAB81936.1 LENGTH 459 SQ:AASEQ MSDFNKKDENLNDYFGFDDKENKTLDSDKDIKDKENIESNNDTKQTNIDETQQLNIDNEINSKDEVKKDDDKNFSDVKSKSSKESNDNSKNKKVKKKSGFKRGIALVAGAVIVAILGGAIGAGGVYYAFKNSIPVSTLENNSNTSVNPPAFKGEDGALTVPQVVEKVTPAVVGVSTKSLVRDQFFNVKEQEGLGSGFIINEDGYVVTNYHVINGAQEVKVIFSDGKEVNAKVVNYDAERDIAVIKITDDVKMPGIAQLGDSSTVKAGEEVIAIGNPLGKEFSSTVTKGIVSSPNRKMKTENGNVLDYIQTDAAINPGNSGGPLINSKGEVIGINTAKKVGEDIEGIGFAIPINEVKTRLGSLSKPILKLGITARTVTPELAKENKLEEGVYVVGVQEFSPAEKAGLKIGDLIVEFGGKRVKTLEELNQVKSQYNDGDSVPVEIIRDGKKVNLNLTLVAN GT:EXON 1|1-459:0| BL:SWS:NREP 2 BL:SWS:REP 5->63|JIP5_DEBHA|2e-04|34.5|58/582| BL:SWS:REP 194->459|HTRA_LACHE|9e-58|46.4|265/413| TM:NTM 1 TM:REGION 103->125| SEG 75->98|sdvksksskesndnsknkkvkkks| SEG 103->128|gialvagavivailggaigaggvyya| BL:PDB:NREP 1 BL:PDB:REP 163->456|2zleA|3e-46|45.2|279/396| RP:PDB:NREP 3 RP:PDB:REP 5->74|3e7jA|5e-05|12.9|70/743| RP:PDB:REP 196->354|3ee1A|8e-37|14.0|136/336| RP:PDB:REP 345->452|2ehrA|6e-13|23.1|108/117| RP:PFM:NREP 1 RP:PFM:REP 387->444|PF00595|4e-05|39.7|58/82|PDZ| HM:PFM:NREP 2 HM:PFM:REP 191->357|PF00089|1.3e-23|30.7|166/219|Trypsin| HM:PFM:REP 383->443|PF00595|3.1e-09|27.6|58/81|PDZ| GO:PFM:NREP 1 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| RP:SCP:NREP 2 RP:SCP:REP 163->352|2bhgA1|2e-35|17.5|171/194|b.47.1.4| RP:SCP:REP 344->449|1nf3C|7e-14|13.2|106/123|b.36.1.1| HM:SCP:REP 155->364|1l1jA_|3.3e-63|49.5|208/228|b.47.1.1|1/1|Trypsin-like serine proteases| HM:SCP:REP 342->452|1whdA_|1.2e-20|37.0|100/0|b.36.1.1|1/1|PDZ domain-like| OP:NHOMO 2706 OP:NHOMOORG 995 OP:PATTERN --1----1111111111111111-111112-1--1-----------1-----------------1-13 2372622322222244443-34444344444435554364244433113331445212115522425555311111111111512222112112112--1111223212211111111111111121111112131333554444473573342233333433233554773322223322237533322-423222222222222222223333223123432211111146344333535533455222221111111111111111111122211111111111111111111111111111111111111111111111211311111111111423322223231142221222322223322221-223C333733333648897436465433333333333-6756655447315333676766344333331244432233333333323334A331111111111111111112112112111123123122222444544334445545444444554444322544553423454422342422221111111334374332121233532221232342242554586351111111111111111111121121332222244242222222222222222222221-2333411-11133332333333333333-3333333333333333333333332223333333333333333333332333133333333333311322222222225342222222222221222222222222223422222222222222222---------12222222222222222222222222222--4144444411121222531-------------111---------1111111111454 2---111-2---111------------------------1--------------------------------------------------------------------D-25544c24313454752849J4-4391322554331422242164544311111--11121--215775*55477977A-AA3521118 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 372 STR:RPRED 81.0 SQ:SECSTR ###ccTTEEEEEEEEEEEEcccccccEEEEEEEEEEEccTTcEEEEEEEEccccETEEEEEcccTTccEEEEEE####################################################################################cHHcccccccccHHHHHHHHHcccccccEEEEETccHccccHHHHHHHHHHHHHTTcHHHHHHHHHTTcTTTTcccHHHHHHHHHHHHHHHHHEEEEcTHHHccccccEEEEEEEEccccEETTcEEEEEEccEEEcEccTcccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHccGGTcGcEEEEEEEEccHHHHHHcTTTTTcccHHHHHHHHHHHHHHTTcccccEEccEEETTEEEEEEEcTTccEEEEcccccccGGGTTcccccccTTccccEEEEETTEEEEEEEEEccc DISOP:02AL 1-6, 8-101, 131-157| PSIPRED ccccccccccccccccccccccccccccccccccccccHHccccccccccHHHcccccHHcccccccccccccccccccccccHHHHccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEEEEEcccccccccccEEEEEEEEccccEEEEcHHHHccccEEEEEEcccEEEEEEEEEEcccccEEEEEEEcccccccEEEcccccccccccEEEEEEcccccccccEEEEEEEEEcccccccccccEEEEEEEEEEcccccccccEEEcccEEEEEEEEEEcccccccEEEEEEEcccEEEEEcccccEEEEEEEEEcccHHHHHHcccccEEEEEEEccccHHHHcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEEEc //