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Clostridium perfringens str. 13 (cper0)
Gene : CPE2260
DDBJ      :CPE2260      ATP-dependent DNA helicase
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  906/915 : Eukaryota  97/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:751 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->637 3pjrA PDBj e-175 51.9 %
:RPS:PDB   7->441 3e1sA PDBj 9e-73 8.4 %
:RPS:PDB   449->659 1b77A PDBj 7e-27 13.2 %
:RPS:SCOP  7->646 1qhh.1  c.37.1.19 * e-103 52.2 %
:HMM:SCOP  2->643 1qhh.1 c.37.1.19 * 2.7e-176 38.6 %
:RPS:PFM   11->426 PF00580 * UvrD-helicase e-102 47.0 %
:RPS:PFM   425->578 PF04257 * Exonuc_V_gamma 1e-04 27.8 %
:RPS:PFM   554->607 PF01443 * Viral_helicase1 5e-04 47.6 %
:HMM:PFM   7->489 PF00580 * UvrD-helicase 9.7e-151 42.2 483/533  
:HMM:PFM   516->608 PF01443 * Viral_helicase1 5e-05 30.8 78/226  
:BLT:SWISS 7->748 PCRA_STAES 0.0 50.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81966.1 GT:GENE CPE2260 GT:PRODUCT ATP-dependent DNA helicase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2596086..2598341) GB:FROM 2596086 GB:TO 2598341 GB:DIRECTION - GB:GENE CPE2260 GB:PRODUCT ATP-dependent DNA helicase GB:NOTE 751 aa, similar to gpu:AP001509_86 ATP-dependent DNA helicase from Bacillus halodurans (747 aa); 50.1% identity in 742 aa overlap GB:PROTEIN_ID BAB81966.1 LENGTH 751 SQ:AASEQ MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTNKAAGEMRERVKSLVGEVANNMWISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKELNINEKEITDLEILGTIGKAKDNIQSAQSFKKENEDNFRKNKIADAYLLYQKKLKENNALDFDDLIVKTVELFRKHNDVLEFYQNKFKYIMIDEYQDTNKAQYEFAKLLAAKHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPEAKVVKLEQNYRSKGNILEAANKVIKNNAERKFKILRTEQVEGEKISIHRAYSDKMEAAFVVSEIEKLKNDNGYKYKDFAVLYRTNAQSRNFEEALRRAGIPYRIFGGLKFYDRKEIKDILAYLKIIVNPKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKKFTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFEKSNEEDKSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFPNAACFEHDNQMEEARRLCYVGITRAEEKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDYVNINGKSSSNSFKNTSQTYGETRKTYNPHSIRGGMSVSKANESLNKTLSGKSSGNAGIDELTMGRKVKHPKFGVGTLITKSKVGDDYKLTIAFDSQGVKHLMFSFAPLELL GT:EXON 1|1-751:0| BL:SWS:NREP 1 BL:SWS:REP 7->748|PCRA_STAES|0.0|50.4|712/729| BL:PDB:NREP 1 BL:PDB:REP 7->637|3pjrA|e-175|51.9|628/646| RP:PDB:NREP 2 RP:PDB:REP 7->441|3e1sA|9e-73|8.4|429/517| RP:PDB:REP 449->659|1b77A|7e-27|13.2|189/228| RP:PFM:NREP 3 RP:PFM:REP 11->426|PF00580|e-102|47.0|415/449|UvrD-helicase| RP:PFM:REP 425->578|PF04257|1e-04|27.8|144/999|Exonuc_V_gamma| RP:PFM:REP 554->607|PF01443|5e-04|47.6|42/220|Viral_helicase1| HM:PFM:NREP 2 HM:PFM:REP 7->489|PF00580|9.7e-151|42.2|483/533|UvrD-helicase| HM:PFM:REP 516->608|PF01443|5e-05|30.8|78/226|Viral_helicase1| GO:PFM:NREP 7 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| GO:PFM GO:0008854|"GO:exodeoxyribonuclease V activity"|PF04257|IPR006697| GO:PFM GO:0009338|"GO:exodeoxyribonuclease V complex"|PF04257|IPR006697| GO:PFM GO:0004386|"GO:helicase activity"|PF01443|IPR000606| RP:SCP:NREP 1 RP:SCP:REP 7->646|1qhh.1|e-103|52.2|611/623|c.37.1.19| HM:SCP:REP 2->643|1qhh.1|2.7e-176|38.6|619/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2276 OP:NHOMOORG 1025 OP:PATTERN -------------------------12-2412412--1--311-3122-12-2--------1----2- 1232433333333332222-23223222222333232433254523333332333333334444444433532223332232111211122111111--1121114224122222222222222312122131222233331112111131111233111111211111222111222121222111122245344444334354345433333344323222332222223323222222222232222222222222222222222222222212222222222222222332232222222222222222233222323243344555334444434443444344434532153112217222222122232111121111223223112222211111111111-12116131232122212322223212232111211321111111111321312111111111121112222222222222111111112233233322222222222233222323234334511753223222543345243222222222222332232334332232622222222442333333333313233233333322222222232322322342443233322232224322242322321-2222312122242322422222222342-22222222222222222223343323332222222222422223222222231333333333333--3422222333332433422323223223222332232223232232232232222223233222233222344533333343432222323222222222235544552231321232311111-11111111112112211112222211111112 --11--2-311---1111111111-11-------------------11-111111111-1--112232112122222-3222222211-11111111111111311-153---------------------------------3--------------2----1---------11233181-11-1113114-2----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 655 STR:RPRED 87.2 SQ:SECSTR ####ccTcccHHHHHHHHHcHHHHHHHHHTccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHHTccEEEccccccccccccEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccTTTTTTccHHHHHHHHHHTTccEcHHHHHHHHHHHHHHTTcHEcHHcEEEEEccHHHHHHHHHHHTccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHHHHHHccEEEcccccHHHHTcHHHHHHHHHHTTcccccccTTEEEEEcccTTcHHHHHHHHHHTTcGGGcEEEEcccccTTcHHHHHHHHHHHHccccccEEccccEEcTTcEEEEccccTTTTccTTcEEEEEEEccccEEEEETTEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEEETccTEEEEcccTTccHHHHHHHTTTcccHHHHHHHHHHHHTcccTTccHHHHHHHEcEcccEEEccHHHHHHHHTTccTTcEEETTccEEEEccccEEEccccccEccccGGGccccccccccccccEETccGEEEEccTTEcHHHHHHHHHHHHHTTccEEEEEEETTEEcEEEEEcTTTcTTcccccEEEEccEEEEEEEETTEEEEEEEccccEE############################################################################################ DISOP:02AL 645-699| PSIPRED ccccccccHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccEEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEccccccccc //