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Clostridium perfringens str. 13 (cper0)
Gene : CPE2264
DDBJ      :CPE2264      16S pseudouridylate synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  796/915 : Eukaryota  28/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:239 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->216 1vioA PDBj 2e-20 40.4 %
:RPS:PDB   2->216 3dh3B PDBj 9e-29 25.6 %
:RPS:SCOP  3->58 1vioA2  d.66.1.5 * 3e-12 30.9 %
:RPS:SCOP  63->216 1kskA4  d.265.1.3 * 1e-28 34.9 %
:HMM:SCOP  3->103 1fjgD_ d.66.1.2 * 4.1e-18 33.3 %
:HMM:SCOP  59->236 1vioA1 d.265.1.3 * 1.2e-40 36.8 %
:HMM:PFM   63->197 PF00849 * PseudoU_synth_2 7.6e-25 30.4 135/164  
:HMM:PFM   2->45 PF01479 * S4 1.3e-13 43.2 44/48  
:BLT:SWISS 2->106 Y292_MYCPN 8e-05 31.7 %
:BLT:SWISS 84->216 YTZF_BACSU 4e-28 43.6 %
:PROS 101->115|PS01149|PSI_RSU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81970.1 GT:GENE CPE2264 GT:PRODUCT 16S pseudouridylate synthase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2601132..2601851) GB:FROM 2601132 GB:TO 2601851 GB:DIRECTION - GB:GENE CPE2264 GB:PRODUCT 16S pseudouridylate synthase GB:NOTE 239 aa, similar to gpu:AP001518_104 16S pseudouridylate synthase from Bacillus halodurans (238 aa); 49.1% identity in 214 aa overlap GB:PROTEIN_ID BAB81970.1 LENGTH 239 SQ:AASEQ MERLDKVLSNLGYGTRKEIKQVVKKGFVTVNDEKVKDSGLQIDPEKDTIVINGEKVEYKKYIYLMMNKPAGVISATYDKRDETVIDLLYMEDQVFEPFPVGRLDKDTVGLLLLTNDGDLNHKLISPKYHVDKVYYAEINAPITEKDIKAFENGVTLDDGYKCMSAKLKVIENLEDSSRVEVTVQEGKYHQVKRMFEARGKKVVYLKRTSFGNLPLDESLEEGEYKELSESELAVLYKNF GT:EXON 1|1-239:0| BL:SWS:NREP 2 BL:SWS:REP 2->106|Y292_MYCPN|8e-05|31.7|104/309| BL:SWS:REP 84->216|YTZF_BACSU|4e-28|43.6|133/157| PROS 101->115|PS01149|PSI_RSU|PDOC00885| SEG 107->120|tvglllltndgdln| SEG 217->232|esleegeykelsesel| BL:PDB:NREP 1 BL:PDB:REP 3->216|1vioA|2e-20|40.4|198/230| RP:PDB:NREP 1 RP:PDB:REP 2->216|3dh3B|9e-29|25.6|207/241| HM:PFM:NREP 2 HM:PFM:REP 63->197|PF00849|7.6e-25|30.4|135/164|PseudoU_synth_2| HM:PFM:REP 2->45|PF01479|1.3e-13|43.2|44/48|S4| RP:SCP:NREP 2 RP:SCP:REP 3->58|1vioA2|3e-12|30.9|55/58|d.66.1.5| RP:SCP:REP 63->216|1kskA4|1e-28|34.9|149/172|d.265.1.3| HM:SCP:REP 3->103|1fjgD_|4.1e-18|33.3|96/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 59->236|1vioA1|1.2e-40|36.8|174/0|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 1648 OP:NHOMOORG 824 OP:PATTERN -------------------------------------------------------------------- 1221111111111111111-11111111111111111111111111111111111111--11111111111-1111111111121222111111-11--21222121212-1111111-11111111111111111111111111111111111122111111111122221111111111111112222-222-4444444344444422222244422232332222223332222222222222222222-21222212222211222221112333333333322333333333333333333333333333333333323324222222242422223344232222221111121111222222-222112333-----11----1------11111-1-1---22211212-11-1---111111111123-11-1111-1--------------2-1--------------11--------------11-1-121213223233333333333333333333333333333333321222133334333333333332223322111311111111111111111111111311121111-----1-1-------2111133332343423433555566544444-55444--111111--11132222333333333333-3333333333333333333333222243333333333333333433323332-322232222333--22111111111-3124333213333223213222222233212222222222-1221222111111111243353333333433444444444422221112221111111111112-311111-21111--11111--12---2212211111122 11--11--1---------------------------------------------------------------------------------------------------52-----------------------------------------------------1---------1-1-227223-111-1-11114111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 90.4 SQ:SECSTR HEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEccccEEETTEEEccccGGGccEEEEEEcTTcccccccccTTcHHHHHTccccccccEEccccccccEEEEEEEccTHHHHHHHcGGGcccEEEEEEEcccccHHHHHHHHTcccccccccccccEEccEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETTEEcT####################### PSIPRED cHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEcccccEEcccccEEEEcccEEEccccEEEEEEccccEEccccccccccEEEEEHHccccccEEEcccccccccEEEEEEccHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHccEEEccccEEccEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHcccEEEEEEEEEEEEEEcccccccccEEEccHHHHHHHHHHc //