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Clostridium perfringens str. 13 (cper0)
Gene : CPE2283
DDBJ      :CPE2283      probable fimbrial assembly protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  124/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.55.1
:384 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   50->383 1e4gT PDBj 2e-11 12.8 %
:RPS:SCOP  230->354 1jceA2  c.55.1.1 * 2e-05 17.6 %
:HMM:SCOP  51->217 1e4fT1 c.55.1.1 * 1.5e-14 26.5 %
:HMM:SCOP  219->383 1e4fT2 c.55.1.1 * 8.4e-15 20.1 %
:RPS:PFM   96->221 PF11104 * Competence_A 8e-13 29.6 %
:HMM:PFM   81->220 PF11104 * Competence_A 5.1e-19 29.5 139/146  
:HMM:PFM   228->281 PF02491 * FtsA 1.1e-08 24.1 54/172  
:HMM:PFM   319->379 PF02491 * FtsA 2.9e-05 25.0 52/172  
:HMM:PFM   273->305 PF11241 * DUF3043 0.00026 27.3 33/170  
:BLT:SWISS 50->378 FTSA_ENTFA 3e-05 23.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81989.1 GT:GENE CPE2283 GT:PRODUCT probable fimbrial assembly protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2627000..2628154) GB:FROM 2627000 GB:TO 2628154 GB:DIRECTION - GB:GENE CPE2283 GB:PRODUCT probable fimbrial assembly protein GB:NOTE 384 aa, similar to pir:C75477 probable fimbrial assembly protein PilM from Deinococcus radiodurans (strain R1) (391 aa); 18.3% identity in 334 aa overlap GB:PROTEIN_ID BAB81989.1 LENGTH 384 SQ:AASEQ MAIENKEKKSILQMNVSDILKALKKKNSEKKNDKKGSKKKAKSVICKKTISIDIGSENTKIIVGRYHKNKVIIDKAFSFKTPKDGIDDGHIKDIDSLARAITDALDSNNVKNDNVIFTTNSTSVINRTIIIPKVNEDEIESVIKYEVQQYLPINLEDHMIQYNVLEEKVIDGNEKLEVLIVVYPNKMVYSYAELINKIGRKPYALDLNYNSKRKAYYVMNPEIRESILSIDMGAENIALTIMKDNELILIKTTKSGGNYLNSKISKVLEISLENAEMQKRENCNLMNREEGPLEHVVREVVDSWFDEASRIIKYYKSKNTQNNIDKIYICGGSSNIKGLERYVSTKLNMKVKIVQGNSNIEFKKGVEEVNISEYINAIGALIRL GT:EXON 1|1-384:0| BL:SWS:NREP 1 BL:SWS:REP 50->378|FTSA_ENTFA|3e-05|23.4|316/440| SEG 21->48|kalkkknsekkndkkgskkkaksvickk| SEG 83->95|kdgiddghikdid| RP:PDB:NREP 1 RP:PDB:REP 50->383|1e4gT|2e-11|12.8|328/375| RP:PFM:NREP 1 RP:PFM:REP 96->221|PF11104|8e-13|29.6|125/144|Competence_A| HM:PFM:NREP 4 HM:PFM:REP 81->220|PF11104|5.1e-19|29.5|139/146|Competence_A| HM:PFM:REP 228->281|PF02491|1.1e-08|24.1|54/172|FtsA| HM:PFM:REP 319->379|PF02491|2.9e-05|25.0|52/172|FtsA| HM:PFM:REP 273->305|PF11241|0.00026|27.3|33/170|DUF3043| RP:SCP:NREP 1 RP:SCP:REP 230->354|1jceA2|2e-05|17.6|125/196|c.55.1.1| HM:SCP:REP 51->217|1e4fT1|1.5e-14|26.5|162/193|c.55.1.1|1/2|Actin-like ATPase domain| HM:SCP:REP 219->383|1e4fT2|8.4e-15|20.1|164/191|c.55.1.1|1/1|Actin-like ATPase domain| OP:NHOMO 130 OP:NHOMOORG 126 OP:PATTERN -------------------------------------------------------------------- -1--------------------------------------1---1---1--------------------------------------------------------------------------------------------------------------------1-----------------111--11---------------------------------------------------------------------------------------------------------------------------1---------111-1-------1-111--1111--3---1112-112--111-1111------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111111111-11--------11-11111111-1--------11111111111111111---------------------------111-11----1-----------------1----11-1--------------------------------------------------------------------------------------------1-----11111111----------------1111111-1-111111--1-1----1111------------------------------------------------------------------------------------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 335 STR:RPRED 87.2 SQ:SECSTR ################################################cEEEEEcccEEEEEEEEEcccccEEETTEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEcEEEEEEEEEEcTTccEEccHHHHHHHHHHHHHHccTTEEEEccccEEccTEEcEEEEEEEEEEEEHHHHHHHHHHHTTccccEEEHHHHEEHHHHHHHHHccHHHHHHcEEEEEcccccEEEEEEETTEEEEEEEEcccHHHHHHHHHHHHHHHcccccTTccccEEEEEcTTcccEEEEHHHHHHHHHHHHHHHHHHHHHHTccccccEEEEcGGGGcTTHHHHHHHHHcccEEccTTccccccccccccTTcGGGHHHHHHHHT# DISOP:02AL 1-11, 25-47| PSIPRED ccccccHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEEEEEccHHHHcccEEEcHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHcccccHHHHEEEEEEccccccccccEEEEEEEEccHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHcccccccEEEEEEEcccEEEEEEEEccEEEEEEEEEccHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEccHHHcccccccccccccHHHHHHHHHHcc //