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Clostridium perfringens str. 13 (cper0)
Gene : CPE2486
DDBJ      :CPE2486      probable serine protease
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  864/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
b.36.1b.47.1
:385 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   116->384 3gduC PDBj 3e-21 32.3 %
:RPS:PDB   117->281 3ee1A PDBj 3e-14 11.9 %
:RPS:PDB   302->380 3cs0A PDBj 9e-13 32.0 %
:RPS:SCOP  111->291 1befA  b.47.1.3 * 2e-14 12.9 %
:RPS:SCOP  287->384 2i4sA1  b.36.1.5 * 7e-13 12.2 %
:HMM:SCOP  116->295 1sotA2 b.47.1.1 * 3.8e-28 32.9 %
:HMM:SCOP  266->385 1ueqA_ b.36.1.1 * 5.6e-16 31.0 %
:RPS:PFM   301->372 PF00595 * PDZ 3e-05 32.4 %
:HMM:PFM   301->371 PF00595 * PDZ 7.8e-09 23.2 69/81  
:BLT:SWISS 111->384 DEGP_CHLTR 3e-30 32.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82192.1 GT:GENE CPE2486 GT:PRODUCT probable serine protease GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2846599..2847756) GB:FROM 2846599 GB:TO 2847756 GB:DIRECTION - GB:GENE CPE2486 GB:PRODUCT probable serine protease GB:NOTE 385 aa, similar to sp:HTRA_CHLTR PROBABLE SERINE PROTEASE DO-LIKE PRECURSOR (EC 3.4.21.-) (59 KDA IMMUNOGENIC PROTEIN) (SK59) from Chlamydia trachomatis (serotype D, strain UW3/Cx) (497 aa); 31.8% identity in 274 aa overlap. 1 putative transmembrane region was found by PSORT proteinase Do GB:PROTEIN_ID BAB82192.1 LENGTH 385 SQ:AASEQ MGNFFKNSKKGKDLHGVNEKNYDNIVIKKDKKRFWIKSLLKLVSFVILVVLVSFIAFKHYTKDLTMKEQKANLLNEIKDGRYDITNLVNKSGCSLVTIGDDSNNLAIGKDDGKNVSGSIIRTDGYIITSYSAIKDFSKVYVKISSNDISPFEARIVGFDKDTDIAVLKIGANGLKSISTSELEVLEIGEKVATLGNTTSEEPVGFVSNGIVSAPIKKTSVGEEGHSDSKVFDLIETNSLINSDNNSGILCDYNGVVIGINSLYFTNKFSKPGIYYALEINDALRIADSIIRKGGVTASVTLGVTGSTVADEKSNIYGIYVEDVDKGSNAFNAGIKPTDIIVEADNEKVKNIESLADLLKKHSVGDIIKLKVIRGDTTKDISVTLN GT:EXON 1|1-385:0| BL:SWS:NREP 1 BL:SWS:REP 111->384|DEGP_CHLTR|3e-30|32.7|260/497| TM:NTM 1 TM:REGION 36->58| SEG 37->55|ksllklvsfvilvvlvsfi| BL:PDB:NREP 1 BL:PDB:REP 116->384|3gduC|3e-21|32.3|248/292| RP:PDB:NREP 2 RP:PDB:REP 117->281|3ee1A|3e-14|11.9|134/336| RP:PDB:REP 302->380|3cs0A|9e-13|32.0|75/379| RP:PFM:NREP 1 RP:PFM:REP 301->372|PF00595|3e-05|32.4|71/82|PDZ| HM:PFM:NREP 1 HM:PFM:REP 301->371|PF00595|7.8e-09|23.2|69/81|PDZ| GO:PFM:NREP 1 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| RP:SCP:NREP 2 RP:SCP:REP 111->291|1befA|2e-14|12.9|147/177|b.47.1.3| RP:SCP:REP 287->384|2i4sA1|7e-13|12.2|98/102|b.36.1.5| HM:SCP:REP 116->295|1sotA2|3.8e-28|32.9|170/213|b.47.1.1|1/1|Trypsin-like serine proteases| HM:SCP:REP 266->385|1ueqA_|5.6e-16|31.0|113/123|b.36.1.1|1/1|PDZ domain-like| OP:NHOMO 2072 OP:NHOMOORG 949 OP:PATTERN --1------------111111-------------1-----------1-----------------1-13 2352411111111133333-323333333333344423532233231121-1222-1-112221224343211111111111412222111111111--11111222121111111111111111111111111313335533333334733322223333332333545522222222222232-1122-313222222222222222113333223122122211111124211111111111111222221111111111111111111122111111111111111111111111111111111111111111111111211311111111111412222223121121221222221212222221-2225333533333446575435345333333333333-5545555435315333665654343333331233332233333333323333433111111111111111111111111111111212212222244454433333554533333444433332243342242333332233242222111111122335312111123242112123233223254458433111111111111111111111112-332222232222222222222222222222221-1322311-11123332232332222222-3222222222322222223333332222322222222222222322222223133333333333311311111122224332212222222221222222222222223322222222222222222---------12222222222222222222222222222--412222221111111133--------------------------1111111111351 --------1---------------------------------------------------------------------------------------------------4-223445-21-223133-4-4B3-216121132222-2-1-3--4242231-111--1112---1-3322j331447234-462421115 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 78.4 SQ:SECSTR ###################################################################################HHHHHHHHGGGEEEEEEEEEETTTTEEccccccccccHHHHHHHHHHHHHTTcHHHHHHHccHHTTcTTTTcccHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEEEEccTTcccccEEEEEEccEEEccccEEEEEccTTEEEEEEEEEEEEccccTTcEEEEccccHHHHHHHccGcccGGcEEEEEEEEccHTTTcccTTTTTcccccHHHHHHHHHHHHTTccccccEEccEEETTEEEEEEEcTTccEEEEcccccccGGGTTcccccccTTccccEEEEETTEEEEEEEEEc DISOP:02AL 1-20, 60-80, 104-112| PSIPRED cccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEEEccccEEEEEHHHHccccEEEEEEEccccEEEEEEEEEEcccccEEEEEEccccccEEEEccccccccccEEEEEEEcccccccccEEEEEEEEccccccccccccccccccEEEEEcccccccccccEEEccccEEEEEEEEEEEcccccccEEEEEEEcccEEEHHHccccEEEEEEEEEEEEEEEEccHHcccccEEEEEEccccHHEEcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEc //