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Clostridium perfringens str. 13 (cper0)
Gene : CPE2496
DDBJ      :CPE2496      probable nucleoside transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  338/915 : Eukaryota  131/199 : Viruses  0/175   --->[See Alignment]
:408 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   17->81 PF01773 * Nucleos_tra2_N 1e-09 47.7 %
:RPS:PFM   196->404 PF07662 * Nucleos_tra2_C 5e-48 57.2 %
:HMM:PFM   196->405 PF07662 * Nucleos_tra2_C 7.9e-82 56.8 206/208  
:HMM:PFM   8->81 PF01773 * Nucleos_tra2_N 8.6e-34 54.1 74/75  
:HMM:PFM   93->187 PF07670 * Gate 2.2e-13 19.1 94/109  
:BLT:SWISS 19->404 YUTK_BACSU 1e-79 49.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82202.1 GT:GENE CPE2496 GT:PRODUCT probable nucleoside transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 2857918..2859144 GB:FROM 2857918 GB:TO 2859144 GB:DIRECTION + GB:GENE CPE2496 GB:PRODUCT probable nucleoside transporter GB:NOTE 408 aa, similar to pir:H82087 NupC family protein VC2352 from Vibrio cholerae (group O1 strain N16961) (418 aa); 43.4% identity in 401 aa overlap. Putative N-terminal signal sequence and 8 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB82202.1 LENGTH 408 SQ:AASEQ MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWISNGITKLLDFTKEGSSFLFGPLLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVKVIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIKNMTRSEICAIMVGGMATVAGGVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIEAAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLAFIMGVPTKDVFAAGDLLGIKLAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLSSVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTATIAGILFSA GT:EXON 1|1-408:0| BL:SWS:NREP 1 BL:SWS:REP 19->404|YUTK_BACSU|1e-79|49.1|383/404| TM:NTM 9 TM:REGION 1->22| TM:REGION 29->51| TM:REGION 97->119| TM:REGION 166->188| TM:REGION 196->218| TM:REGION 253->275| TM:REGION 286->308| TM:REGION 346->368| TM:REGION 382->404| SEG 5->16|igvigliciigi| SEG 36->47|lllqiifallil| SEG 112->131|lgivqvvvkviakgvakvlg| SEG 171->194|mvggmatvaggvmagyvamgvnag| SEG 274->283|fgaiggifga| RP:PFM:NREP 2 RP:PFM:REP 17->81|PF01773|1e-09|47.7|65/75|Nucleos_tra2_N| RP:PFM:REP 196->404|PF07662|5e-48|57.2|208/211|Nucleos_tra2_C| HM:PFM:NREP 3 HM:PFM:REP 196->405|PF07662|7.9e-82|56.8|206/208|Nucleos_tra2_C| HM:PFM:REP 8->81|PF01773|8.6e-34|54.1|74/75|Nucleos_tra2_N| HM:PFM:REP 93->187|PF07670|2.2e-13|19.1|94/109|Gate| GO:PFM:NREP 3 GO:PFM GO:0005415|"GO:nucleoside:sodium symporter activity"|PF01773|IPR002668| GO:PFM GO:0006810|"GO:transport"|PF01773|IPR002668| GO:PFM GO:0016020|"GO:membrane"|PF01773|IPR002668| OP:NHOMO 971 OP:NHOMOORG 469 OP:PATTERN -------------------------------------------------------------------- 111--1------1------------------------------------------1----------1--------------------------1------1--111-11--------------------------------------1-1-----------------1111---------------------13777776775777767113313778---1111------3-13333333333333322222--1--------------311111---111------------------1111111111111---------------1111111111----2222-1-1-------------------------12111-----1-111---11111------------11111111--1---------------111-------------------11111--------------------------------11121------1111--1-11--1-1111-11-1----------------------1----2---------------111-----11-------1---1--------------------1-1111111-------53-1--111111222211611121462225-------------23112223332323232-323333234332333333332333222121-1111111111-1423233331-32222221222211--------------2-111111111111111------1---1------------------222222222-455433333233331111111111-------------------------------------------------------------1- ------------1111111111111111-----1111111111111--111111111111112-1----1--1-1------11111---1211111-----21323--1-83122263232333843334K3-334233233334233227333322223565774-42123373--------------1----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 222-235| PSIPRED cHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //