[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE2528
DDBJ      :CPE2528      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  623/915 : Eukaryota  190/199 : Viruses  1/175   --->[See Alignment]
d.144.1
:537 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   267->341 1j7lA PDBj 2e-04 38.0 %
:RPS:PDB   3->400 3dnuA PDBj 1e-45 10.3 %
:RPS:SCOP  106->399 1zylA1  d.144.1.6 * 2e-20 12.5 %
:HMM:SCOP  86->442 1j7lA_ d.144.1.6 * 2.3e-17 28.6 %
:RPS:PFM   100->201 PF03109 * ABC1 8e-22 46.1 %
:RPS:PFM   220->288 PF06176 * WaaY 9e-05 35.5 %
:HMM:PFM   98->212 PF03109 * ABC1 1.3e-34 40.0 115/119  
:HMM:PFM   248->293 PF01636 * APH 1.2e-08 30.4 46/238  
:HMM:PFM   416->481 PF09385 * HisK_N 6.8e-06 19.7 66/133  
:BLT:SWISS 6->535 YHG1_CLOPA e-126 43.8 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82234.1 GT:GENE CPE2528 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2895589..2897202) GB:FROM 2895589 GB:TO 2897202 GB:DIRECTION - GB:GENE CPE2528 GB:PRODUCT conserved hypothetical protein GB:NOTE 537 aa, similar to pir:S38903 hypothetical protein 1 from Clostridium pasteurianum (530 aa); 48.1% identity in 530 aa overlap. 4 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB82234.1 LENGTH 537 SQ:AASEQ MSKGQSAKRLKEIVRVFTYYGFDFLISSKLPNSKKVEPRPQALREALEELGATFVKIGQILSTRPDLLPKAYIEELEKLQDNNEITDFHKVKEIFYESFGTDINTYFLEFSETPLASASIAQVHRAQLIDGRDVVVKVQHYKIDEKMKLDLSILRRLSKLTSSHIANTLINPVEAFKEIEEATLKELDFEKEAKNTKRFRELNKNVACVGAPIIIDKLTSKKILTMEYIDGCKVTDFNILKEEGYDFEDIANKLANSFFKQVLEDGFFHGDPHPGNLFIREGKIYFIDFGLVGTLEANLRNWLNKAMIAMVLGDIDTLVDFVNAIGIKKGKVEYSILYDDLKNIVSKYINASLKTIKISDLFKEIFEIAERNNIQFPRELVALVRSIVILEGVIAKIDPDLEIMECIYPYVKERNKEEMLKSLNKDKLLTEAYKFASKSIEIPTKFSELVDSLTKGRAKLQFEMKGLDKPLTDLNRMVNRVAFSLIVGCMIIGSSLIVNAKTGPTFQGVPILGLIGFIVSGIFGLWLLISIIKSGFF GT:EXON 1|1-537:0| BL:SWS:NREP 1 BL:SWS:REP 6->535|YHG1_CLOPA|e-126|43.8|527/530| TM:NTM 2 TM:REGION 478->500| TM:REGION 510->532| BL:PDB:NREP 1 BL:PDB:REP 267->341|1j7lA|2e-04|38.0|71/263| RP:PDB:NREP 1 RP:PDB:REP 3->400|3dnuA|1e-45|10.3|370/401| RP:PFM:NREP 2 RP:PFM:REP 100->201|PF03109|8e-22|46.1|102/119|ABC1| RP:PFM:REP 220->288|PF06176|9e-05|35.5|62/229|WaaY| HM:PFM:NREP 3 HM:PFM:REP 98->212|PF03109|1.3e-34|40.0|115/119|ABC1| HM:PFM:REP 248->293|PF01636|1.2e-08|30.4|46/238|APH| HM:PFM:REP 416->481|PF09385|6.8e-06|19.7|66/133|HisK_N| GO:PFM:NREP 1 GO:PFM GO:0009244|"GO:lipopolysaccharide core region biosynthetic process"|PF06176|IPR009330| RP:SCP:NREP 1 RP:SCP:REP 106->399|1zylA1|2e-20|12.5|288/325|d.144.1.6| HM:SCP:REP 86->442|1j7lA_|2.3e-17|28.6|189/263|d.144.1.6|1/1|Protein kinase-like (PK-like)| OP:NHOMO 2212 OP:NHOMOORG 847 OP:PATTERN ------1111111111--------31121112111--------1-11--2221--------111--11 --121---------A2222-22223222222222244322111111---1--11-111--222-311122-1111111-1212--111-----------1-11211112---------------------------22222---114665555443333344455444445333333333333-------12-------12----111-11-------1211111-------1---------------------------1---1111------------------------------------------------111----11-1-1111111111-122-111--11---11222---311222121--1112522211111221211111122211111111111-333333332121111111111111231212212222221111111111111112211111111111111111111111111111141311111111111111111111111111111211111112211113123341111222122211111112221124-2211---2-----232221211111123-21-------------------11-1111112242111121111113111111112111--11111------11111111111111111-11111111111111111111111111111111111111111112111111111111111111111111111111111125511111---1----1111444444444411111111111-1112111111111111111111111122211333333333311111111222222-----------------------------------------------1- 2222435-B55-4452342344444442323334444424344433335544442443444434232334334423333333344434-34232323323434444-5X753A5773312133467382IY5-747132242333-424241-A52443--435341334A3343BEGJ*JJJEFRCFM3LKJJ5444a ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 421 STR:RPRED 78.4 SQ:SECSTR ##TTEEEEEEEEcTTccEEEEEcccccTTccccccc#cccHHHHHHHHTTccccHHHHHHHHHHHTcccccHHHHHHHHTTcccTTEEHTTHHHHHEETTEEEEETTccccEEEccHHHHHHHHHTTETcccccccccccccEEEEEETTEEEEEcTTccccEEEEccccTTHHHHHHHHEEEEHHHHHHTTcccccEEEEEETTEEEEEEEcccEEEcTTccTTccGGGccGGGTcccHHHHHHHTcTTHHHHHHHHHHHHHHHHTTcccccGGGcEEEGGcEEEcccccccccGGGTTTccccGGGcEEEEEEETTEEEEEGGGccHHHHHHHHHHTTccHHHHHHHHHHcGGGHHHHHHHHHHHHGGGccTTccHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHT################################################################################################################# DISOP:02AL 1-3, 30-38, 460-475| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHEEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEEccEEEcccccEEEEEEEccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEEcccccccEEEEcccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //