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Clostridium perfringens str. 13 (cper0)
Gene : CPE2580
DDBJ      :CPE2580      probable short-chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  876/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:292 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->292 3i3oC PDBj 1e-82 52.9 %
:RPS:PDB   43->292 2ae1A PDBj 5e-50 25.0 %
:RPS:SCOP  43->292 1bdbA  c.2.1.2 * 8e-50 22.3 %
:HMM:SCOP  42->287 1zemA1 c.2.1.2 * 4.9e-78 37.9 %
:RPS:PFM   47->201 PF00106 * adh_short 5e-23 37.6 %
:HMM:PFM   47->213 PF00106 * adh_short 3.6e-33 22.6 164/167  
:BLT:SWISS 7->290 GS39_BACSU 3e-84 52.3 %
:PROS 184->212|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82286.1 GT:GENE CPE2580 GT:PRODUCT probable short-chain dehydrogenase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2955566..2956444) GB:FROM 2955566 GB:TO 2956444 GB:DIRECTION - GB:GENE CPE2580 GB:PRODUCT probable short-chain dehydrogenase GB:NOTE 292 aa, similar to pir:G83378 probable short-chain dehydrogenase PA2142 from Pseudomonas aeruginosa (strain PAO1) (286 aa); 53.4% identity in 283 aa overlap GB:PROTEIN_ID BAB82286.1 LENGTH 292 SQ:AASEQ MSNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGRAVSLAYAREGAKVCIIYLSDEEDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKVIEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVFGTFYMTKAAVKYMECGSSIINTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMNKKKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING GT:EXON 1|1-292:0| BL:SWS:NREP 1 BL:SWS:REP 7->290|GS39_BACSU|3e-84|52.3|281/286| PROS 184->212|PS00061|ADH_SHORT|PDOC00060| SEG 203->215|alttmtrtlatml| BL:PDB:NREP 1 BL:PDB:REP 10->292|3i3oC|1e-82|52.9|280/281| RP:PDB:NREP 1 RP:PDB:REP 43->292|2ae1A|5e-50|25.0|244/252| RP:PFM:NREP 1 RP:PFM:REP 47->201|PF00106|5e-23|37.6|149/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 47->213|PF00106|3.6e-33|22.6|164/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 43->292|1bdbA|8e-50|22.3|247/267|c.2.1.2| HM:SCP:REP 42->287|1zemA1|4.9e-78|37.9|243/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 14130 OP:NHOMOORG 1122 OP:PATTERN 22211359B8A8A987-9132-119228465722---------21134--522-23112-23853146 FGV3U1-4448151fzjIJ-It22a*IHHIHUt***bv**5i9*FIA34B62OGG63711GDQ3HHRSVJA11112121297T21544558627121--76R5FAjBX8L1111111111111138547B425784CEEGD222ICABE97674432211522471CG9T7111222214222C9767781G7LFFGFGHGIEFHGIJGMHOOEMGGGAFHMMGA988898Ke855555445555554AAAAA92B17715121685567656899645656555533322222232222454455565555524422144475359C5554444547846626756331158222A6123225333366523C2GeGGP12111MA*ca56AXNTRNGHKHFGJIKJS-DGODCfDKWrc2waaLWWf*wopmPXGLDMGSNFLPHCG88888888IPQA57C9333223321123224432312211311129Dq*H8GaUJW*hkoptMNNOLeessRQQQ8Q*U*R*lc38QNJIAGFENHZGna8C9575AA4112111124AMC85K58312111422234863F54847977FM332534233224223222222231534669787DEE7LE4688696CBA997C59A87A1-2333711-111BCCD5H6CFFECDDDDD-FDCEFCDCGDFCEDDCEDFMQNE78899779989999978799NCC8BBAD31977777777777121745343DCBC3BIMG222627233321573GIKOJ8I6C9L9MNLMFNPcFHGOHHMJL6443354343445E545548A689FFECFBAAAC54441243996555--------1-3----2-----1------1-------34421656763A3 2112EHC-4-2-5ACgrgbjbjX*owkMM9GEIKLKKSIOIPQIGHWUXfly**RVXMGOJM99I2584B43A9B222126CBDFB5B-VmKrHbICBB9FDHKGE-BJA*KWJHH943544D5FE2B3LpF-BDF4362F57H73A547E12H6A9HSknQCfTKGDAOPFXTH59A5j2228IIWY*XtKFEOEGC7 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 292 STR:RPRED 100.0 SQ:SECSTR HHHTTcccccEEEcTTcccccccGGGcccccccccccGGGGGccTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHccEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHHHHHHHHHHHTHHcccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGcc DISOP:02AL 1-6, 8-23, 34-35, 37-42| PSIPRED ccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEcccEEEcc //