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Clostridium perfringens str. 13 (cper0)
Gene : apbA.2
DDBJ      :apbA         thiamin biosynthesis lipoprotein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  495/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
d.96.2
:342 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->267 1vrmA PDBj 2e-31 35.4 %
:RPS:SCOP  27->328 1vrmA1  d.96.2.1 * 7e-90 30.3 %
:HMM:SCOP  27->333 1vrmA1 d.96.2.1 * 1.8e-98 41.7 %
:RPS:PFM   60->315 PF02424 * ApbE 3e-56 41.5 %
:HMM:PFM   61->315 PF02424 * ApbE 3.1e-84 41.8 251/252  
:BLT:SWISS 7->338 APBE_TREPA 8e-49 31.9 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81933.1 GT:GENE apbA.2 GT:PRODUCT thiamin biosynthesis lipoprotein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 2548415..2549443 GB:FROM 2548415 GB:TO 2549443 GB:DIRECTION + GB:GENE apbA GB:PRODUCT thiamin biosynthesis lipoprotein GB:NOTE 342 aa, similar to sp:APBE_TREPA THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR from Treponema pallidum (362 aa); 32.8% identity in 332 aa overlap CPE2227 GB:PROTEIN_ID BAB81933.1 LENGTH 342 SQ:AASEQ MENLRHICIFLCMILTFTLNGCSIKKEPISKSSFFMGTIVNITLYDKFDEGIIDKAFNKISEIESLLSLNIQNSEINKINEKSGIEPVKVTKTTFDIIEKSLEYSKASKGNFDITIGPLVKLWGIGSEDARVPDDNEILDTIKLINYENIILDKENTTVFLKEENMVLDLGAIAKGYIADLISDILIDEGVSKAIIDLGGNIFALGEKNKNENWTIGIQNPFENRGAPLGTLSICNKSVVTSGIYERYLEINNTKYHHILNPKTGYPYDNNLASVTIVSSKSIDGDALSTSTFGMGLSDGLELIESLPEIEGIFVTKSKEIFISKGLKNNFKLLDNSFKIAN GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 7->338|APBE_TREPA|8e-49|31.9|332/362| TM:NTM 2 TM:REGION 3->24| TM:REGION 166->188| BL:PDB:NREP 1 BL:PDB:REP 34->267|1vrmA|2e-31|35.4|226/304| RP:PFM:NREP 1 RP:PFM:REP 60->315|PF02424|3e-56|41.5|253/253|ApbE| HM:PFM:NREP 1 HM:PFM:REP 61->315|PF02424|3.1e-84|41.8|251/252|ApbE| GO:PFM:NREP 1 GO:PFM GO:0009228|"GO:thiamin biosynthetic process"|PF02424|IPR003374| RP:SCP:NREP 1 RP:SCP:REP 27->328|1vrmA1|7e-90|30.3|297/309|d.96.2.1| HM:SCP:REP 27->333|1vrmA1|1.8e-98|41.7|302/0|d.96.2.1|1/1|ApbE-like| OP:NHOMO 657 OP:NHOMOORG 501 OP:PATTERN -------------------------------------------------11----------------- 1-4-----------------------------------------------------------------1---------1232-1-1111131-2111---131123-4-111111111111111111-1-112-21111111111-------------------------------------------11-1---------------------------------11111111----------------11--21-144-1111331133-112-122211121-11111111111111111111111111111221112221112251111111-1-2111122-12111121--22---121--1111-111-31111-----1-1-111212-1222222121221-11211211-1---------1-----211---2---1-11-------------1------------------------------------1-1-12-------2111----222212---1223-111122-2212-1--1111111-112111111--211-11211111-311-----1---1-11-1-111--------------------1--11--222124212112222213422223423242--12112-1----11221221111111111-1111111111111111111222221111111111111111111211111111-111111111111---2---------22213111111111111111-------111121111111-111211111---------1111111111211111111111---11111111--------------111-------------------------1111111111-11 --------212--------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 82.5 SQ:SECSTR #################################EETTEEEEEEEEccccHHHHHHHHHHHHHHHHHTccccTTcHHHHHHTccccccEEccHHHHHHHHHHHHHHHHTTTcccTTTHHHHHHHTTTcGGcccccHHHHHHHHTTccGGGEEEETTTEEEEEEcTTcccccTTTHHHHHHHHHHHHHHcTTcEcEEEEETTEEEEEEccTTTccEEEEEEcTcccTcccEEEEEEcccEEEEEETTccEEEETTEEEEccccTTTcccccccEEEEEEEEccHHHHHHHHH#####HHHHcHHHHHHHHHHHTcEEEEEEc###################### DISOP:02AL 1-2, 341-342| PSIPRED cHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHcccccEEEEEccccEEEEEcccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEcccEEEEEccccccccEEEEEEccccccccEEEEEEEcccEEEEEcccEEEEEEccEEEEEEEccccccccccccEEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHccccEEEEEEEcccEEEcccHHHHHHHHccccEEcc //