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Clostridium perfringens str. 13 (cper0)
Gene : appB
DDBJ      :appB         oligopeptide ABC transporter
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  794/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:321 amino acids
:PSIPRED
:RPS:SCOP  188->319 2r6gG1  f.58.1.1 * 1e-09 8.4 %
:RPS:PFM   115->319 PF00528 * BPD_transp_1 5e-12 30.4 %
:HMM:PFM   114->319 PF00528 * BPD_transp_1 3.7e-46 36.1 183/185  
:BLT:SWISS 17->318 APPB_BACSU 3e-69 42.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81978.1 GT:GENE appB GT:PRODUCT oligopeptide ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2609987..2610952) GB:FROM 2609987 GB:TO 2610952 GB:DIRECTION - GB:GENE appB GB:PRODUCT oligopeptide ABC transporter GB:NOTE 321 aa, similar to pir:B75381 peptide ABC transporter, permease protein from Deinococcus radiodurans (strain R1) (333 aa); 41% identity in 322 aa overlap. Putative N-terminal signal sequence and 5 putative transmembrane regions were found by PSORT. CPE2272 permease protein GB:PROTEIN_ID BAB81978.1 LENGTH 321 SQ:AASEQ MLQYITRRILLIIPTIVGVSLVLFFIFAMAPGDAITANMDPNMSVETKQAIREKYHLDEPKTTQYMYWLKGVVTEGSLGESFYYKRPVSEVMKDFIPNSFILGAASLILGLIIAVPIGIVSATKQYSFFDKFFTVFALMGISMPSFFFGLILIKYLGVQLNLFPISGMTTPGSAYTGMQYVLDVLKHMILPLIVLTLGSVGGWMRYTRSSMLEVVRQDYIRTARAKGLKEKVVIYKHALRNALIPVVTLLGMSIPGLFSGATLTEKIFNWPGIGPVQLSAVNNRDYYLLMGINLTLAILVLIGNLLADIIYALVDPRIRLK GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 17->318|APPB_BACSU|3e-69|42.8|297/316| TM:NTM 6 TM:REGION 9->31| TM:REGION 99->121| TM:REGION 137->159| TM:REGION 182->204| TM:REGION 242->264| TM:REGION 289->311| SEG 5->16|itrrilliipti| SEG 101->114|ilgaaslilgliia| RP:PFM:NREP 1 RP:PFM:REP 115->319|PF00528|5e-12|30.4|191/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 114->319|PF00528|3.7e-46|36.1|183/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 188->319|2r6gG1|1e-09|8.4|131/284|f.58.1.1| OP:NHOMO 3671 OP:NHOMOORG 856 OP:PATTERN 4441314266665564453332113336435212---1-----113-42-EA5-55433133314-11 -113D443444-4122322-23112A2222224333287919186EB536648A732511552395987A42333733323-411111--------2--------11--122222222222222211111111121465952217A3322333221111111132215322111111111111A5433A91423666664564546445A76663655314C521222222E6155545555655556333322222342-12111--33111112234333333311112211111112222222222222231122211111C36244434541422222111153153C-111BA631-282-3462174411----1121132HHO115854B19AAA9AA8AAL-44C43A4DQP1-lRRXJJEXUMOPK4-116CEB7BB7DF1111111123322219-------------------------------11--CFBCC68888654555559955552567E64A7113342363353D5DS241142242-------111221346132352233331111111211----14111111-----1122222212214-1211653121111151111111211111121121--13321------76KE4987777777777-7777777777777676776BCBCA3366666666666666666976666674-666666656666--111111111111174844412333322423322222121235333233658265442ABA1----1---246666666656688--1-------------12111111222122126-111211-212221122212212211143854BEB89212 -----------------------------------------------------------------------------------------------------------------1--------------------------------------------2----3---------1-----------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //