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Clostridium perfringens str. 13 (cper0)
Gene : cbiD
DDBJ      :cbiD         cobalamin biosynthesis protein
Swiss-Prot:CBID_CLOPE   RecName: Full=Putative cobalt-precorrin-6A synthase [deacetylating];         EC=2.1.1.-;

Homologs  Archaea  39/68 : Bacteria  253/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
e.54.1
:365 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   113->198 1sr8A PDBj 1e-09 38.1 %
:RPS:SCOP  4->269 1sr8A  e.54.1.1 * 7e-32 25.4 %
:HMM:SCOP  1->285 1sr8A_ e.54.1.1 * 7.1e-87 51.0 %
:RPS:PFM   13->266 PF01888 * CbiD 4e-55 46.5 %
:HMM:PFM   11->266 PF01888 * CbiD 3.7e-86 46.9 256/261  
:BLT:SWISS 1->365 CBID_CLOPE 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80932.1 GT:GENE cbiD GT:PRODUCT cobalamin biosynthesis protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1428424..1429521) GB:FROM 1428424 GB:TO 1429521 GB:DIRECTION - GB:GENE cbiD GB:PRODUCT cobalamin biosynthesis protein GB:NOTE 365 aa, similar to sp:Y022_METJA HYPOTHETICAL PROTEIN MJ0022 from Methanococcus jannaschii (362 aa); 40.5% identity in 321 aa overlap. 1 putative transmembrane region was found by PSORT CPE1226 GB:PROTEIN_ID BAB80932.1 LENGTH 365 SQ:AASEQ MFDMYIESGGKKLRCGYTTGSCAAAAAKAATYMLFNKKDISVIEIDTPKNIKLNLEIQDIQVEKNSISCSIVKDGGDDIDATSGLEIFAKAEEVEEGFELCGGEGVGVVTKEGLFVEKGQPAINPVPREMIKKEVLSVLPKDKGVRITIFVPRGREIAKKTFNPRLGIVNGISILGTTGIVYPMSEEALKESIRIEIRQKAVNNKDLVFVFGNMGERFLRERGYKKDNIVVISNYVGFSIECALAQGIKDLTIVGHIGKLSKIAFGCFNTHSRVSDVRLEVIALELTLMGYDLELVQKVLDQKTSEGAVRLLGEDFPMLYERIGEKVLNRLDIYAYGEANFNILMYYGSKEMKLLYESKNSNLFD GT:EXON 1|1-365:0| SW:ID CBID_CLOPE SW:DE RecName: Full=Putative cobalt-precorrin-6A synthase [deacetylating]; EC=2.1.1.-; SW:GN Name=cbiD; OrderedLocusNames=CPE1226; SW:KW Cobalamin biosynthesis; Complete proteome; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->365|CBID_CLOPE|0.0|100.0|365/365| GO:SWS:NREP 2 GO:SWS GO:0009236|"GO:cobalamin biosynthetic process"|Cobalamin biosynthesis| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 23->30|aaaaakaa| SEG 102->109|ggegvgvv| BL:PDB:NREP 1 BL:PDB:REP 113->198|1sr8A|1e-09|38.1|84/282| RP:PFM:NREP 1 RP:PFM:REP 13->266|PF01888|4e-55|46.5|254/260|CbiD| HM:PFM:NREP 1 HM:PFM:REP 11->266|PF01888|3.7e-86|46.9|256/261|CbiD| GO:PFM:NREP 2 GO:PFM GO:0009236|"GO:cobalamin biosynthetic process"|PF01888|IPR002748| GO:PFM GO:0016740|"GO:transferase activity"|PF01888|IPR002748| RP:SCP:NREP 1 RP:SCP:REP 4->269|1sr8A|7e-32|25.4|236/282|e.54.1.1| HM:SCP:REP 1->285|1sr8A_|7.1e-87|51.0|255/282|e.54.1.1|1/1|CbiD-like| OP:NHOMO 293 OP:NHOMOORG 292 OP:PATTERN ------1111111111--1-1-1---------111111111111-111111111-------111--11 ---1--------------------------------------------------------1-----1--1-----------11-----11-1-111---------1-------------------11-------1111111-----111111111111111-1-111111111111111111111-11----1-------------------------1111---1111111----------------------------------11---------------------------------------------1----------111111111111111111111111----111111111--1111----11------------1--11--------111111111-1-1-1--1-------111--------11---1---------11111111----11-1----------------------------------------111111-11111111111111111--------1-21---11-1---1----1------------11-11-1-1-1-1111-111111111-----1-1-----------------------------1-------------------------1------1-------1---1--------------------------------111--11-11-1111111111111----------1------------------------1-1-1---------------------------1111111--1111-111---------------------1------------------1---1111--------1------------------------------11-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 84 STR:RPRED 23.0 SQ:SECSTR ################################################################################################################EEcEETTEEcccHHHHHHHHHHHHHHHHHccEEEEE##cTTHHHHHHTTcGGGGTcccEEcccccccEEccccHHHHHHHHHHGGG####################################################################################################################################################################### DISOP:02AL 364-365| PSIPRED cccccccccccEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEcccccEEEcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHccccccEEEcHHHcccccEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHccccHHHEEEEHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHccHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEcccccccc //