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Clostridium perfringens str. 13 (cper0)
Gene : cilA
DDBJ      :cilA         citrate lyase alpha subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  125/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.124.1
:519 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   48->518 2hj0A PDBj e-152 65.0 %
:RPS:PDB   64->518 2ahuA PDBj 2e-28 15.7 %
:RPS:SCOP  23->244 1xr4A1  c.124.1.2 * 4e-86 52.3 %
:RPS:SCOP  245->517 1xr4A2  c.124.1.2 * 3e-85 56.9 %
:HMM:SCOP  3->244 1xr4A1 c.124.1.2 * 2.3e-71 42.4 %
:HMM:SCOP  245->517 1xr4A2 c.124.1.2 * 9.1e-66 38.7 %
:RPS:PFM   48->513 PF04223 * CitF e-175 64.4 %
:HMM:PFM   48->516 PF04223 * CitF 3.9e-228 61.5 465/466  
:BLT:SWISS 47->518 CILA_HAEIN e-156 56.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80855.1 GT:GENE cilA GT:PRODUCT citrate lyase alpha subunit GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1342512..1344071 GB:FROM 1342512 GB:TO 1344071 GB:DIRECTION + GB:GENE cilA GB:PRODUCT citrate lyase alpha subunit GB:NOTE 519 aa, similar to sp:CILA_LEUMC CITRATE LYASE ALPHA CHAIN (EC 4.1.3.6) (CITRASE) (CITRATE COA- TRANSFERASE SUBUNIT) (EC 2.8.3.10) from Leuconostoc mesenteroides (512 aa); 58.7% identity in 508 aa overlap CPE1149 GB:PROTEIN_ID BAB80855.1 LENGTH 519 SQ:AASEQ MGINSININIPDDILKERKTVEFKGEFALEPKGNIQGRKITATFCGKNKKLSSIAESIEKTGLKDGMTISFHHHFRAGDYIIRMVMKEIANLGIKNLNLCVSSLTSAHEFLIDYIKDGTVTGIETSGIRGKLGEEISKGIMKKPVIIRSHGGRARAIEAGDTKIDVAFLGVPCSDEYGNANGIHGKSQCGSLGYAIIDSKYADKVVLITDTIMPYPNVPASISQQDVDYIVEVEEIGDPNGIASGATRFTKDPKELLIAKYASAVIEASGYLKDGFSIQAGTGGASLAVARFLKEKMEEKNIKASFGLGGISKQFVDLHEEGFIGTLFDVQGFDLKAVESIGKNNKHVEIDASLYANPHNKGCIANKLDIVILSALEVDKNFNVNVITGSDGYIRGASGGHSDTAAGAKLSMIVSPLVRGRIPTIVEKVNTVITPGESIDVIVTERGVAINDKLSKNKELKERLESNKNIPILSIEELHEKALKITGTPEPIKYEDRVVGIVEYRDGSIIDVIHKVKED GT:EXON 1|1-519:0| BL:SWS:NREP 1 BL:SWS:REP 47->518|CILA_HAEIN|e-156|56.8|468/500| SEG 3->10|insinini| BL:PDB:NREP 1 BL:PDB:REP 48->518|2hj0A|e-152|65.0|451/498| RP:PDB:NREP 1 RP:PDB:REP 64->518|2ahuA|2e-28|15.7|395/505| RP:PFM:NREP 1 RP:PFM:REP 48->513|PF04223|e-175|64.4|461/463|CitF| HM:PFM:NREP 1 HM:PFM:REP 48->516|PF04223|3.9e-228|61.5|465/466|CitF| GO:PFM:NREP 4 GO:PFM GO:0005737|"GO:cytoplasm"|PF04223|IPR006472| GO:PFM GO:0006084|"GO:acetyl-CoA metabolic process"|PF04223|IPR006472| GO:PFM GO:0008814|"GO:citrate CoA-transferase activity"|PF04223|IPR006472| GO:PFM GO:0009346|"GO:citrate lyase complex"|PF04223|IPR006472| RP:SCP:NREP 2 RP:SCP:REP 23->244|1xr4A1|4e-86|52.3|216/236|c.124.1.2| RP:SCP:REP 245->517|1xr4A2|3e-85|56.9|269/269|c.124.1.2| HM:SCP:REP 3->244|1xr4A1|2.3e-71|42.4|236/0|c.124.1.2|1/1|NagB/RpiA/CoA transferase-like| HM:SCP:REP 245->517|1xr4A2|9.1e-66|38.7|269/0|c.124.1.2|2/2|NagB/RpiA/CoA transferase-like| OP:NHOMO 145 OP:NHOMOORG 125 OP:PATTERN -------------------------------------------------------------------- -1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11--11---1-11--111--1-11-----1111-11-----------111111111--11---------1-2------------------1-1-2--------11----1--------1-------------------------1------------------1--------------1-------1----------------------------------------------------------------------------------------------------------1---------------------------------------1-1-----1------------------------------------------------------------------------------121121-1111111111-112111111111111111111-11---2122222222222222111-1111--1--------------------------------11-1111-----------------------------------------------111111----------------------1--------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 472 STR:RPRED 90.9 SQ:SECSTR ##############################################HcEEEccHHHHHTTTHccTTTEEEEEEccGcccTTcHHHHHHHHTTccEEEcccHHHHHHHHHHHTTccEEEEcTTTTcTTcTTTTTTccccccccccEEEEEETTEEEEEEEccccccEEEEEccEEETTccEEcTTccccccTTHHHHHHHHHTTTcEEEEcEEcTTcccGGGEEEcGccEEEEcTTccccTTcccccHHHHTcccccccccHHHHHHHHHHTTcTTcEEEEcccTTTTHHHHHHHHTcGGGEEEccEcHHEEcccHcEEccTTcEEcccccccccTTcEEcEEcccccEEccHHHHHHHHTcHHHHTcccEEEEEccEEETTccEEccEETTEcccEccTTHHHHHTTccEEEEEcccEEcccEEEEccccEEEEEcccEEcEEccccccEEETTTEEEcccHHHHHHTTcEEEEEcccEEHHHHHHTTccHEEEETTEEEEEEEcTTccHHHHTGGGc# DISOP:02AL 1-3, 35-49, 518-519| PSIPRED ccccccccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccccEEEEEcEEccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHccEEEcccccccccHHHHHHHcccccccEEEEcccHHHHHHHcccccEEEEEEEEcccccccEEEcccccccEEEccHHHHHHHHccEEEEEEEccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccccccccccHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEcEEEcccccccccEEccccEEEEcEEEEEEcccEEEEEEcccEEEcccccHHHHHHHHccEEEEEccccccccEEcccccccccccccccEEEEEEEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEcccEEEEEEEEcccccHHHHHHHccc //