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Clostridium perfringens str. 13 (cper0)
Gene : cobW
DDBJ      :cobW         probable cobalamin synthesis related protein
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  481/915 : Eukaryota  107/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.6.1d.237.1
:308 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->162 1nijA PDBj 4e-15 29.7 %
:RPS:PDB   41->246 2egzA PDBj 2e-14 9.6 %
:RPS:SCOP  70->130 1tmlA  c.6.1.1 * 3e-06 15.0 %
:RPS:SCOP  226->307 1nijA2  d.237.1.1 * 9e-10 19.5 %
:HMM:SCOP  2->206 1nijA1 c.37.1.10 * 1.1e-27 24.5 %
:HMM:SCOP  223->310 1nijA2 d.237.1.1 * 1.4e-06 16.5 %
:RPS:PFM   3->159 PF02492 * cobW 1e-17 31.8 %
:HMM:PFM   5->177 PF02492 * cobW 3.6e-38 30.5 167/173  
:HMM:PFM   224->307 PF07683 * CobW_C 1.2e-09 22.5 80/94  
:BLT:SWISS 3->162 YJIA_ECOLI 1e-14 29.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB79743.1 GT:GENE cobW GT:PRODUCT probable cobalamin synthesis related protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 49974..50900 GB:FROM 49974 GB:TO 50900 GB:DIRECTION + GB:GENE cobW GB:PRODUCT probable cobalamin synthesis related protein GB:NOTE 308 aa, similar to pir:H70313 cobalamin synthesis related protein CobW from Aquifex aeolicus (292 aa); 30.7% identity in 261 aa overlap CPE0037 GB:PROTEIN_ID BAB79743.1 LENGTH 308 SQ:AASEQ MKVDIISGFLGAGKTTLIKKLLDTLVKDEKVAIVENEYGEVGIDGDLLKDRRIEVKEINSGCICCTIKGDFKQNILDIISNYRPDRVIIEPSGVANFSQVLESIKEAHIEGLRINMKITMVDAQNVHMYMKNFGDFYRSQLVNANTIILTRVEKLSDKEITHVCNEIKTINNKANIITTELSKLSPERIIQVSEKKVESLIENINIKKPKRIGLRRVSAPEFFENWGVETPKTFEYSELVKILNEFQNNKHGEVLRAKGIIKSKDNKWFKFDFVPNDISIVNYKSDYTGRVCVIGRNLNKDSIDKLFS GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 3->162|YJIA_ECOLI|1e-14|29.7|158/318| SEG 14->27|kttlikklldtlvk| SEG 165->180|neiktinnkaniitte| BL:PDB:NREP 1 BL:PDB:REP 3->162|1nijA|4e-15|29.7|158/317| RP:PDB:NREP 1 RP:PDB:REP 41->246|2egzA|2e-14|9.6|197/216| RP:PFM:NREP 1 RP:PFM:REP 3->159|PF02492|1e-17|31.8|151/174|cobW| HM:PFM:NREP 2 HM:PFM:REP 5->177|PF02492|3.6e-38|30.5|167/173|cobW| HM:PFM:REP 224->307|PF07683|1.2e-09|22.5|80/94|CobW_C| RP:SCP:NREP 2 RP:SCP:REP 70->130|1tmlA|3e-06|15.0|60/286|c.6.1.1| RP:SCP:REP 226->307|1nijA2|9e-10|19.5|82/95|d.237.1.1| HM:SCP:REP 2->206|1nijA1|1.1e-27|24.5|200/222|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 223->310|1nijA2|1.4e-06|16.5|85/95|d.237.1.1|1/1|Hypothetical protein YjiA, C-terminal domain| OP:NHOMO 1242 OP:NHOMOORG 595 OP:PATTERN ----------------------------1--1------1----------2622--------------- ------1-111-1-1-1-------------------1-1-------------------------1-------------1--1111-1----1-------------1--1-----------------------1---1111----2-BB42444332232332221235433324333333333211------2-3333324323242222211--332----211------11233333333333333222311-------------------------------------------------------------------------311111111121-22211111--1-11--131--1---------11--21111-21-2232352223324244444444444-4434434423--43354326553453---22312221322222222211132111-------------------------------1---1432223353312222447222222252324311122212111311122213-1--111111111---11------11111111--------1------1--2---------1-1-1111111-----------121-2-11111111111111111111----11-------32322212222222222-221222222222222122222323--1222222222222222232222222--111111111111---------------2-2---------------111111211-22323335571333314441111111112122111111211311111111111------21-----------------------------------------------------1- --11212-----1121111211111111111111111111111111--111111222--111111-11----1--------111-12--11111112221111121-1E3-----------------------------------------------------1-----------1233*4446411141321355436 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 236 STR:RPRED 76.6 SQ:SECSTR ##EEEEEEccccccHHHHHHHHHcccc#ccEEEEccccccEEEccTTHHHTcHHHHHHHHTccEEEEEGGGcccccHHHHHHHHHHHHHTTcEEEEcccGGGTccccTTHHHHHHHHTTTccEEEEETTcHHHHHHHHHHHHTTcEEEEEEEEccccccHHHHHHHHHHHHHTTcEEEEEEEcccHHHHHHH#######HHHHTTccccEEEEEccGGGGHHHHGGGGTccEEEcHHHHHHHHHHH############################################################## PSIPRED cEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHccHHHHccEEEEEEEEEEEcccHHHHHccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHccccccHHHHHcccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEEEEccccEEEEEEEcccccccccccccccEEEEEEccccHHHHHHHHc //