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Clostridium perfringens str. 13 (cper0)
Gene : comEC.1
DDBJ      :comEC        probable late competence protein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  343/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.157.1
:291 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->282 1wraB PDBj 1e-11 25.9 %
:RPS:PDB   53->275 3bv6A PDBj 3e-20 10.5 %
:RPS:SCOP  38->282 1wraA1  d.157.1.8 * 7e-39 24.5 %
:HMM:SCOP  39->284 2bibA2 d.157.1.8 * 4.1e-56 38.0 %
:RPS:PFM   49->121 PF00753 * Lactamase_B 4e-07 42.6 %
:HMM:PFM   53->237 PF00753 * Lactamase_B 2.5e-18 20.7 179/194  
:BLT:SWISS 41->273 COMEC_BACSU 9e-32 34.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81205.1 GT:GENE comEC.1 GT:PRODUCT probable late competence protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1750939..1751814) GB:FROM 1750939 GB:TO 1751814 GB:DIRECTION - GB:GENE comEC GB:PRODUCT probable late competence protein GB:NOTE 291 aa, similar to pir:T44344 late competence protein homolog comEC from Bacillus halodurans (266 aa); 33.7% identity in 246 aa overlap CPE1499 GB:PROTEIN_ID BAB81205.1 LENGTH 291 SQ:AASEQ MFKKILAIISTVTVLSFAGCGAQKNNISKSSAESEYSGMSVTYLNVGQGDSELIQVNGINMLIDAGTNAGANDLVKDLKNRGIKTIDIAIATHPHEDHIGGMDEVLENFDVKSFYAPKVAHTTKTYENMLKAVKNEGLKIKQIKEGTKIDLGKDTDVQVYSPVKSQYEELNNYSPVMKISYGQNSFMFTGDAESLVEKEILNENKDLKADVLKLGHHGSHSSTSEEFLKAVDPSIAIVSCAKDNKYGHPHKETMSNLKKAGITVYETFRDGDITISSNGKKLDVKLHSENK GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 41->273|COMEC_BACSU|9e-32|34.9|232/776| TM:NTM 1 TM:REGION 5->27| SEG 215->222|ghhgshss| BL:PDB:NREP 1 BL:PDB:REP 35->282|1wraB|1e-11|25.9|247/308| RP:PDB:NREP 1 RP:PDB:REP 53->275|3bv6A|3e-20|10.5|220/353| RP:PFM:NREP 1 RP:PFM:REP 49->121|PF00753|4e-07|42.6|68/171|Lactamase_B| HM:PFM:NREP 1 HM:PFM:REP 53->237|PF00753|2.5e-18|20.7|179/194|Lactamase_B| GO:PFM:NREP 1 GO:PFM GO:0016787|"GO:hydrolase activity"|PF00753|IPR001279| RP:SCP:NREP 1 RP:SCP:REP 38->282|1wraA1|7e-39|24.5|245/305|d.157.1.8| HM:SCP:REP 39->284|2bibA2|4.1e-56|38.0|242/0|d.157.1.8|1/1|Metallo-hydrolase/oxidoreductase| OP:NHOMO 481 OP:NHOMOORG 353 OP:PATTERN ------------------------111---1-------------2113----2--------------- 111----------------------------------1----1--------------------1111-----------2-111--1----------------------1----------------------------11-111111-------------------------------------22211----113333322323332231211112322212321333333211111111-1111111-11111111111111111111111111-1--111111111122222222222111111111-1111111111111222232222222635132233312421111122222322241222221--11-----------------------------------------------------------------------------------------------------------------------------------11-1------11------------1---111--1----11-1----1-11----------11----1111-1-11111-1111111111--1-3111-----------------------------1--1--111-1-11-1-1---1-11--1-----1--------------1111111-1--1111111111111111111-----1-------------------111---1---11111111111--11-----11111-------111-111--111-1111-1-------------------------------111111111111111----------------1-----------------1---------------------------1---------- -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 253 STR:RPRED 86.9 SQ:SECSTR #############################cEEEcccccEEccEEEEEETTTEcccTTcHHHHHHcccccccccccccccccGGccccEEEcccccGGGccHHHHHHHHHHccTTcTTcEEEEcHHHHHHHHHHTccGGGEEEccTTcEEEETTEEEEEEEcccHHHHTcHHHHcEEEEEEETTEEEEEcTTccccTTHHHHHHHccccEEEEEcccccTTccccccHHHHHHHHEEEEcTTccGGGcccTHHHHHHHHHHTTTTTcccEEccccTGGGcccc######### DISOP:02AL 22-37, 286-291| PSIPRED ccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccEEEEEEccEEEEEEccccccHHHHHHHHHHcccccccEEEEEcccHHHcccHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccccEEEccccEEEEccEEEEEEEEcccccccccccccEEEEEEEcccEEEEEcccccHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHcccEEEEEccccEEEEEEcccEEEEEEEEccc //