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Clostridium perfringens str. 13 (cper0)
Gene : cstA
DDBJ      :cstA         probable carbon starvation protein
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  242/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
:483 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   15->122,224->276 PF02554 * CstA 5e-15 45.4 %
:HMM:PFM   3->144 PF02554 * CstA 1.7e-49 42.3 142/376  
:HMM:PFM   156->287 PF02554 * CstA 6e-39 34.8 132/376  
:HMM:PFM   355->404 PF03739 * YjgP_YjgQ 0.00065 12.0 50/355  
:BLT:SWISS 14->298 Y112B_HAEIN 1e-66 54.0 %
:BLT:SWISS 328->427 Y1127_HAEIN 3e-26 49.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80449.1 GT:GENE cstA GT:PRODUCT probable carbon starvation protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 921005..922456 GB:FROM 921005 GB:TO 922456 GB:DIRECTION + GB:GENE cstA GB:PRODUCT probable carbon starvation protein GB:NOTE 483 aa, similar to gpu:AE004154_11 carbon starvation protein A, putative from Vibrio cholerae (494 aa); 48.1% identity in 437 aa overlap. Putative N-terminal signal sequence and 11 putative transmembrane regions were found by PSORT. CPE0743 GB:PROTEIN_ID BAB80449.1 LENGTH 483 SQ:AASEQ MISFLLSLVLLIVGYFTYGKFVDKTFGTNDSIETPAESMADGVDYVPMSWPRIFLIQFLNIAGLGPIFGAIAGALWGPVAFLWIVFGCIFAGAVHDYFTGVLSIRNKGVSVAELVGKYLGEIPRKIMVIFSVVLLILVGVVFLTGPADLLKTLTGIDRDIFIVIIVVYYIAATVLPVDKVIGKIYPIFGLCLLIMAVGIGAGIVIEGYNIPEIQLANFHPEGTPIFPFLFITIACGAISGFHATQSPIMARCVKKESEARKVFYGAMIAEGVIALVWAAAAMSFFGDTNGLQEILKAGGPATVVNTISNTVMGKVGAVLAILGVVACPISSGDTAFRSARLTIADAFKLKQDKVIDRFKIAIPLFVVGIALTFIDFGIIWRYFSWSNQTLAMIMLWAASAYMLKAHNNYWITLVPAVFMSAVTCSYILQAPEGFRLNATFSNIAGVVFALVLFGIFIKYCKKENNENCEIVEIEEVKEVIKNK GT:EXON 1|1-483:0| BL:SWS:NREP 2 BL:SWS:REP 14->298|Y112B_HAEIN|1e-66|54.0|285/371| BL:SWS:REP 328->427|Y1127_HAEIN|3e-26|49.5|99/138| TM:NTM 12 TM:REGION 1->21| TM:REGION 46->68| TM:REGION 73->95| TM:REGION 118->140| TM:REGION 154->176| TM:REGION 187->209| TM:REGION 221->243| TM:REGION 263->285| TM:REGION 311->333| TM:REGION 359->381| TM:REGION 408->430| TM:REGION 438->460| SEG 2->13|isfllslvlliv| SEG 128->143|vifsvvllilvgvvfl| SEG 162->174|iviivvyyiaatv| SEG 196->205|avgigagivi| SEG 315->326|vgavlailgvva| SEG 460->482|ckkennenceiveieevkevikn| RP:PFM:NREP 1 RP:PFM:REP 15->122,224->276|PF02554|5e-15|45.4|161/379|CstA| HM:PFM:NREP 3 HM:PFM:REP 3->144|PF02554|1.7e-49|42.3|142/376|CstA| HM:PFM:REP 156->287|PF02554|6e-39|34.8|132/376|CstA| HM:PFM:REP 355->404|PF03739|0.00065|12.0|50/355|YjgP_YjgQ| GO:PFM:NREP 2 GO:PFM GO:0009267|"GO:cellular response to starvation"|PF02554|IPR003706| GO:PFM GO:0016020|"GO:membrane"|PF02554|IPR003706| OP:NHOMO 305 OP:NHOMOORG 258 OP:PATTERN ---1--------------111-1-1---1-11------------------1---1--11-1------- -11--1--111---------------------1---11--------------11111------1-11---1-----11---1-1----1111-1---------------1---------------------11-----------------------------------------------------------1111111----111--121111111-1121211-----------------------1---1-----------------------121111------------------------------------------21--2222222-2--2--1111-1-11111-----1--121-11--111111----------------------------------11-11-1-----------------------------------------------1--------------------------------1-------1----1-------------------111--111-11------1-----1--21--11111-------11-1-111-22221-2---------2--1-11--1-----1-1-1111111-1-----2111---111-1122212122221-11211--1-11---------11-------------------------------------122---------------------------222222222222-------------11-11111111112111111-------111---------------1--------------1111111111111-----------------1--1111--------1----------------------------1-11-1-----1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 481-483| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccEEcccHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHHHHHEEcccccccHHHHEEcccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHcccEEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccc //