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Clostridium perfringens str. 13 (cper0)
Gene : deoB
DDBJ      :deoB         phosphopentomutase
Swiss-Prot:DEOB_CLOPE   RecName: Full=Phosphopentomutase;         EC=5.4.2.7;AltName: Full=Phosphodeoxyribomutase;

Homologs  Archaea  0/68 : Bacteria  381/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.76.1d.327.1
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->396 2i09B PDBj e-102 54.9 %
:RPS:PDB   195->378 3e2dA PDBj 3e-18 10.4 %
:RPS:SCOP  2->125 2i09A1  c.76.1.5 * 2e-38 40.2 %
:RPS:SCOP  101->219 2i09A2  d.327.1.1 * 4e-32 51.0 %
:RPS:SCOP  220->396 2i09A1  c.76.1.5 * 7e-65 55.2 %
:HMM:SCOP  2->396 2i09A1 c.76.1.5 * 3.6e-78 42.1 %
:RPS:PFM   7->384 PF01676 * Metalloenzyme 2e-20 30.7 %
:HMM:PFM   5->384 PF01676 * Metalloenzyme 1.5e-51 30.1 229/262  
:BLT:SWISS 1->396 DEOB_CLOPE 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80094.1 GT:GENE deoB GT:PRODUCT phosphopentomutase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 501176..502366 GB:FROM 501176 GB:TO 502366 GB:DIRECTION + GB:GENE deoB GB:PRODUCT phosphopentomutase GB:NOTE 396 aa, similar to pir:JE0180 phosphopentomutase (EC 5.4.2.7) from Bacillus stearothermophilus TH6-2 (393 aa); 59.8% identity in 391 aa overlap CPE0388 GB:PROTEIN_ID BAB80094.1 LENGTH 396 SQ:AASEQ MSKYKRIFTIVIDSLGIGAMNDSEKYGDVNVDTLGHIAESVDTFNIPNLQKMGIANLHPIKHVAPVENPIGYQAKMAEASVGKDTMTGHWEMMGLHITKPFKTFTDTGFPQELLDELTERTGHKIVGNKSASGTEILDELGEHQIATGDMIVYTSADSVLQICGQEETFGLEELYRCCEIARELTLKDEWKVGRIIARPYLGTKKGEFKRTSNRHDYALKPYGRTVLNELKDNNFDVISVGKIKDIFDGEGITEGNKSKSSVHGMEQTLEIMDRDFTGFCFVNLVDFDALWGHRRNPQGYAEELEKFDVNLGKVLEKLHEDDLLIITADHGNDPTYTGTDHTREYVPFLAYSPSMKGHGQLETPKTFATIGATIADNFGLKMPEGTIGESVLNKLV GT:EXON 1|1-396:0| SW:ID DEOB_CLOPE SW:DE RecName: Full=Phosphopentomutase; EC=5.4.2.7;AltName: Full=Phosphodeoxyribomutase; SW:GN Name=deoB; OrderedLocusNames=CPE0388; SW:KW Complete proteome; Cytoplasm; Isomerase; Manganese; Metal-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->396|DEOB_CLOPE|0.0|100.0|396/396| GO:SWS:NREP 3 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| BL:PDB:NREP 1 BL:PDB:REP 2->396|2i09B|e-102|54.9|368/381| RP:PDB:NREP 1 RP:PDB:REP 195->378|3e2dA|3e-18|10.4|183/502| RP:PFM:NREP 1 RP:PFM:REP 7->384|PF01676|2e-20|30.7|365/406|Metalloenzyme| HM:PFM:NREP 1 HM:PFM:REP 5->384|PF01676|1.5e-51|30.1|229/262|Metalloenzyme| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF01676|IPR006124| GO:PFM GO:0046872|"GO:metal ion binding"|PF01676|IPR006124| RP:SCP:NREP 3 RP:SCP:REP 2->125|2i09A1|2e-38|40.2|117/283|c.76.1.5| RP:SCP:REP 101->219|2i09A2|4e-32|51.0|96/96|d.327.1.1| RP:SCP:REP 220->396|2i09A1|7e-65|55.2|174/283|c.76.1.5| HM:SCP:REP 2->396|2i09A1|3.6e-78|42.1|273/0|c.76.1.5|1/1|Alkaline phosphatase-like| OP:NHOMO 435 OP:NHOMOORG 382 OP:PATTERN -------------------------------------------------------------------- --1------------------------------------------------------------------1--------1---1-------------------------------------------------------------1--------------------------------------11111111111111111111111111222211111111111111111111111111111111111111111-2-32-------22221-----1112221111111111111111111111111111111112111111111111-------1-1111111111111-21111111111111121111-11--------------1---------------------1111111111--111111111111-----1111111111-----------------------------------------------------------------------------------------------------------1--------------------1---------------1-1111---------------1-1111111-------111---11-111111111111111111111-------11-11121111112112222222-1222222222122222222111111111111111111111111222222211-211111111111---------1111--11----1----------------------------------------111111111-11121111111111----------------11----------------1------11-11--1111---11----1---11111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 395 STR:RPRED 99.7 SQ:SECSTR #ccccEEEEEEETTccHHHHHHHHHHHTcTTcccTTGGGccEEEEEEccEEcTTTcccccHHHHHHHHHHcccccTTcccccccTTccccccHHHHHHHTTcEEEEEEEEETTcHHHHTTTcccccTTcccHHHHHHHcTTTcGGGTccccHHHHHHHHcccEEEEEcTTGGGccccccTTcTccHHHHHHHTTcccEEcccccccccccccccGGGTTcccccccccccTHHHHHHHTccccHHHHHHHHHTccGGGccHHHHHHHHHHHccccccHHHHHHHHcEEEcTTccTTcTTTcccEEEcccccGGGcccccTHHHHHHHHHHHHTEEcccccEEcccEEEEEEccHHHHTGGGccEEEHHHHHHHHHHTcTcccccTTcGGGGccccG DISOP:02AL 1-2| PSIPRED cccccEEEEEEEccccccccccccccccccccHHHHHHHHccccccccHHHHcHHHHcccccccccccHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccccHHHHHHHccccEEEEccEEEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccEEEcHHHHHHHHHccccccccccHHHHHHHc //