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Clostridium perfringens str. 13 (cper0)
Gene : dinP
DDBJ      :dinP         DNA-damage-inducible protein P
Swiss-Prot:DPO4_CLOPE   RecName: Full=DNA polymerase IV;         Short=Pol IV;         EC=2.7.7.7;

Homologs  Archaea  28/68 : Bacteria  714/915 : Eukaryota  184/199 : Viruses  1/175   --->[See Alignment]
d.240.1e.8.1
:359 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->347 2imwP PDBj 6e-49 34.1 %
:RPS:PDB   7->343 2asdA PDBj 9e-88 34.1 %
:RPS:SCOP  4->237 1t94A2  e.8.1.7 * 4e-68 38.2 %
:RPS:SCOP  242->343 1jx4A1  d.240.1.1 * 2e-14 21.0 %
:HMM:SCOP  4->243 1t3nA2 e.8.1.7 * 1.3e-87 49.6 %
:HMM:SCOP  241->342 1t94A1 d.240.1.1 * 2.5e-25 37.6 %
:RPS:PFM   10->156 PF00817 * IMS 8e-34 49.0 %
:RPS:PFM   170->200 PF11798 * IMS_HHH 3e-04 41.9 %
:RPS:PFM   219->322 PF11799 * IMS_C 1e-10 40.0 %
:HMM:PFM   10->157 PF00817 * IMS 1e-53 42.6 148/150  
:HMM:PFM   213->305 PF11799 * IMS_C 1.5e-20 41.8 91/135  
:HMM:PFM   169->200 PF11798 * IMS_HHH 8.6e-10 28.1 32/33  
:BLT:SWISS 1->359 DPO4_CLOPE 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81272.1 GT:GENE dinP GT:PRODUCT DNA-damage-inducible protein P GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1835113..1836192) GB:FROM 1835113 GB:TO 1836192 GB:DIRECTION - GB:GENE dinP GB:PRODUCT DNA-damage-inducible protein P GB:NOTE 359 aa, similar to gpu:AE004300_1 DNA-damage-inducible protein P from Vibrio cholerae (360 aa); 40.8% identity in 336 aa overlap CPE1566 GB:PROTEIN_ID BAB81272.1 LENGTH 359 SQ:AASEQ MKENRKIIHIDMDAFYASIEQRDNPKYKGKPLIVGGDPNRRGVVATCSYEARKYGIHSAMPSLTAYKLCPKAIFIRPRMEVYKKVSRQVMNILNEYSNIVEPLSLDEAFVDVSKSKRCKGSATLIALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRKLPIGKFFGVGRVTKNKLNNIGVFKGEDLLGFSEKELIGILGDRGKILYEFARGIDNRQVNPYRIRKSIGKEITLREDIEDIEEMIEILEKISERVSESLCLLNKKGKTVTLKVKFNDFKHITRSITLEHFLKEQKEIMECVKDLISIVDFKNKKVRLLGITISSLEENIITEEREQLSFDV GT:EXON 1|1-359:0| SW:ID DPO4_CLOPE SW:DE RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; SW:GN Name=dinB; OrderedLocusNames=CPE1566; SW:KW Complete proteome; Cytoplasm; DNA damage; DNA repair; DNA replication;DNA-binding; DNA-directed DNA polymerase; Magnesium; Metal-binding;Mutator protein; Nucleotidyltransferase; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->359|DPO4_CLOPE|0.0|100.0|359/359| GO:SWS:NREP 9 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0003887|"GO:DNA-directed DNA polymerase activity"|DNA-directed DNA polymerase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 254->271|ediedieemieilekise| BL:PDB:NREP 1 BL:PDB:REP 7->347|2imwP|6e-49|34.1|337/348| RP:PDB:NREP 1 RP:PDB:REP 7->343|2asdA|9e-88|34.1|334/341| RP:PFM:NREP 3 RP:PFM:REP 10->156|PF00817|8e-34|49.0|145/148|IMS| RP:PFM:REP 170->200|PF11798|3e-04|41.9|31/33|IMS_HHH| RP:PFM:REP 219->322|PF11799|1e-10|40.0|100/123|IMS_C| HM:PFM:NREP 3 HM:PFM:REP 10->157|PF00817|1e-53|42.6|148/150|IMS| HM:PFM:REP 213->305|PF11799|1.5e-20|41.8|91/135|IMS_C| HM:PFM:REP 169->200|PF11798|8.6e-10|28.1|32/33|IMS_HHH| GO:PFM:NREP 3 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF00817|IPR001126| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00817|IPR001126| GO:PFM GO:0006281|"GO:DNA repair"|PF00817|IPR001126| RP:SCP:NREP 2 RP:SCP:REP 4->237|1t94A2|4e-68|38.2|228/308|e.8.1.7| RP:SCP:REP 242->343|1jx4A1|2e-14|21.0|100/101|d.240.1.1| HM:SCP:REP 4->243|1t3nA2|1.3e-87|49.6|236/0|e.8.1.7|1/1|DNA/RNA polymerases| HM:SCP:REP 241->342|1t94A1|2.5e-25|37.6|101/0|d.240.1.1|1/1|Lesion bypass DNA polymerase (Y-family), little finger domain| OP:NHOMO 1748 OP:NHOMOORG 927 OP:PATTERN ------1111111111--------11111111-----------1--11-2122--------1----11 211-211111111123322-23--242222223333323311-123121111353111--1131112121111112112133------2211-111---21512233212--------------2---1-11-1-2-----111--4----------11---1-1---1--11-111111111--------2-22323313113121212222232312-2222232222222222222222222222222226112222-21111--2221223121121111112111111111111211112111111112112222111121111111111-1-21111111211221-211321-12221111111111-13111-----212232111121111111111112-23123211231-1222221222241111111111111111111111111121211-----------------------------11111-111111111111111111211111111111111-111112111111211111-11511111111112111111221121112111-2121121231121113211-11---------------1-11122311121311111346323332221222222----121------23111322222222222-22232222222222222225321111222121312314333232-122221--211111111111---21-1114332-2112111111-----11112123111-111-111113111112211221-1111-1--212111121111211112111121------2-11--11--------1-3----1-1111111111111111111-1--------211 ----113-74A2113332333233322223233333222313321122332222332232331111-1-1--11111-1-12211122-23232222222-13321-282744446C4443444AB394Ab5-66834334344444233443A2624431425442433C33832222I2223223742452233332 ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ STR:NPRED 358 STR:RPRED 99.7 SQ:SECSTR TcccccEEEEEETTHHHHHHHHHcGGGTTccEEEEEEcTTcEEEEEEcHHHHTTTccTTccHHHHHHHcTTcEEEEccHHHHHHHHHHHHHHHTTTcccEEEEETTEEEEEcTTTcccHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHccccEEEccHHHHHHHHHHccGGGcTTccHHHHHHHHHTTcccGGGGGcccHHHHHHHHcHHHHHHHHHHTTcccccccccccccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHTHcTccEEEEEEEEEETTccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccTTEEEccccEEE# DISOP:02AL 1-2, 346-350| PSIPRED cccccEEEEEEcccHHHHHHHHccccccccEEEEEEcccccEEEEEEcHHHHHcccccccHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHccccEEccccEEEEcccHHHHHcccHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHccccccEEEEcHHHHHHHHHHcccHHHHcccHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccccHHHHcccc //