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Clostridium perfringens str. 13 (cper0)
Gene : eftA
DDBJ      :eftA         electron-transfer flavoprotein alpha-subunit
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  543/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
c.26.2c.31.1d.58.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   73->387 1o96B PDBj 7e-32 30.0 %
:RPS:PDB   18->63 1bc6A PDBj 4e-05 17.4 %
:RPS:PDB   73->391 3clsD PDBj 6e-42 27.9 %
:RPS:SCOP  18->69 1hfeL2  d.58.1.5 * 7e-05 17.3 %
:RPS:SCOP  44->289 1efpB  c.26.2.3 * 3e-33 16.2 %
:RPS:SCOP  273->391 1efpA2  c.31.1.2 * 5e-45 45.4 %
:HMM:SCOP  2->70 2gmhA3 d.58.1.6 * 3.2e-06 33.3 %
:HMM:SCOP  71->265 1o97D1 c.26.2.3 * 8e-58 37.0 %
:HMM:SCOP  270->391 1o97D2 c.31.1.2 * 4.8e-48 50.8 %
:RPS:PFM   76->218 PF01012 * ETF 2e-19 34.5 %
:RPS:PFM   273->354 PF00766 * ETF_alpha 6e-19 43.9 %
:HMM:PFM   73->233 PF01012 * ETF 8.7e-44 34.8 158/164  
:HMM:PFM   271->355 PF00766 * ETF_alpha 4.5e-36 49.4 85/86  
:BLT:SWISS 18->55 HDRA_METTM 1e-04 44.7 %
:BLT:SWISS 69->392 ETFA_MEGEL 9e-78 48.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80018.1 GT:GENE eftA GT:PRODUCT electron-transfer flavoprotein alpha-subunit GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 396320..397513 GB:FROM 396320 GB:TO 397513 GB:DIRECTION + GB:GENE eftA GB:PRODUCT electron-transfer flavoprotein alpha-subunit GB:NOTE 397 aa, similar to sp:ETFA_CLOTS ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (ALPHA-ETF) (ELECTRON TRANSFER FLAVOPROTEIN LARGE SUBUNIT) (ETFLS) from Clostridium thermosaccharolyticum (330 aa); 49.1% identity in 212 aa overlap. 1 putative transmembrane region was found by PSORT CPE0312 GB:PROTEIN_ID BAB80018.1 LENGTH 397 SQ:AASEQ MGRLVVHQDKIEDANSVIKICPFGAMEIVNGKVEINASCRMCKVCVRKGPKGAFEFVEDENKVLVNKDEWKGIAVYVDHVNGEIHPVTLELIGKARELADKVNQKVYCLFMGNGIKDKAGELLHYGVDEVIVYDYKELENFRIEPYTAVFYDFINKIKPCSILVGATTLGRSLAPRVAARCRTGLTADCTILDIKENTDLVQIRPAFGGNIMAQIVTPNSRPQMATVRYKVMSAPERNEECTGEIKYFEIEKDKLKSDIEVKEIKQKPKEHSISDAEVIVVAGRGVKSEKDLEIIKELADLLGGELAVTRPLIENGWADANRQVGLSGRTVRPKLIITCGVSGAIQFVAGMNNADYIFAINKDEKAPIFKVAHYGIVGDIYEIVPKLIEKIKGEGVL GT:EXON 1|1-397:0| BL:SWS:NREP 2 BL:SWS:REP 18->55|HDRA_METTM|1e-04|44.7|38/659| BL:SWS:REP 69->392|ETFA_MEGEL|9e-78|48.4|320/338| BL:PDB:NREP 1 BL:PDB:REP 73->387|1o96B|7e-32|30.0|307/314| RP:PDB:NREP 2 RP:PDB:REP 18->63|1bc6A|4e-05|17.4|46/77| RP:PDB:REP 73->391|3clsD|6e-42|27.9|315/318| RP:PFM:NREP 2 RP:PFM:REP 76->218|PF01012|2e-19|34.5|142/157|ETF| RP:PFM:REP 273->354|PF00766|6e-19|43.9|82/86|ETF_alpha| HM:PFM:NREP 2 HM:PFM:REP 73->233|PF01012|8.7e-44|34.8|158/164|ETF| HM:PFM:REP 271->355|PF00766|4.5e-36|49.4|85/86|ETF_alpha| RP:SCP:NREP 3 RP:SCP:REP 18->69|1hfeL2|7e-05|17.3|52/85|d.58.1.5| RP:SCP:REP 44->289|1efpB|3e-33|16.2|229/246|c.26.2.3| RP:SCP:REP 273->391|1efpA2|5e-45|45.4|119/124|c.31.1.2| HM:SCP:REP 2->70|2gmhA3|3.2e-06|33.3|69/0|d.58.1.6|1/1|4Fe-4S ferredoxins| HM:SCP:REP 71->265|1o97D1|8e-58|37.0|189/0|c.26.2.3|1/1|Adenine nucleotide alpha hydrolases-like| HM:SCP:REP 270->391|1o97D2|4.8e-48|50.8|122/0|c.31.1.2|1/1|DHS-like NAD/FAD-binding domain| OP:NHOMO 1207 OP:NHOMOORG 742 OP:PATTERN 22----2222222222-22322212112-111-----------------------------3322--- 1232211111111111111-11111111111111111122111111-11---111112--11211111121--------152------11111122---111111111-1---------------1111111112111122---12-------11-----------1----------------11111--112111111-1111111111111111111131111------21----------------------1--------11---------------------------------------------------------1532555555554541433422215-3-1-12-973463-141--11-3-12-111111111322221112222211111111111-2222232112113112334335232411111111111112222222212212322-----------------------------1121113321222233422222223722221245612121112261222231213111-112111111111---14115422----------7471915--11211114-------------------------1111-1112121-1111111311112132121-----1-------2-1-1--3332333332-2333333333233333331-------13231333332313113-2213222-----------------1111111111-1124---------------11111111114122222222222221223-------------1-----11-1111111111111111--12111111----------1-------------------------11111121111-- ----111-211-11111111111111111111111111111111111-111111111-1111111111--1111111111111111-1-12111111111111112-11121211-11-11-1111-2-231-12211--1-11111-1-11-2121111211211121131111111-----1111321111121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 390 STR:RPRED 98.2 SQ:SECSTR ####EEEcTTcccccccTTTcTTccEEEccccEEEcTTcccccEEccEEEcEEEEEEcTTccccccTTcccEEEEEccEETTEEcTHHHHHHHHHHHHcccTTcEEEEEEEcTTGGGGHHHHccTTccEEEEEEcccccTccHHHHHHHHHHHHHHHcccEEEEEccHHHHTTHHHHHHHcccEEEEEEcEEEcEETTEEEEEEEETTTTEEEEEccTTcccEEEEEcTTcccccccccccEEEEEEcccccccccccccccccccccccccTTcccEEEEEcGGGccGGGHHHHHHHHHHHTcEEEEcHHHHHTTcccGGGcccccccccTccEEEEEcccccHHHHHHHTTccEEEEEcccTTcGGGGTccEEEcccHHHHHHHHHHHcTcc### DISOP:02AL 234-247| PSIPRED ccEEEEcHHHccccccHHHHccccEEEEEcccEEEHHHccHHHHHHHHcccEEEEcccccHHHHHHHHHHcEEEEEEEEcccEEcHHHHHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHccccEEEEEEcHHHcccccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEEEcccEEEEEEEccccEEEEEEcccccccccccccccccEEEEEcccccccEEEEEEEEEEcccccccccccEEEEEcccccccccHHHHHHHHHHHccEEEccHHHHHccccccccEEEcccEEEccEEEEEEEEccHHHHHcccccccEEEEEEccccccHHHHccEEEEHHHHHHHHHHHHHHHHcccc //