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Clostridium perfringens str. 13 (cper0)
Gene : fabD
DDBJ      :fabD         malonyl CoA-acyl carrier protein transacylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  850/915 : Eukaryota  163/199 : Viruses  0/175   --->[See Alignment]
c.19.1d.358.1
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->305 3ezoA PDBj 3e-53 39.1 %
:RPS:PDB   2->308 3eenA PDBj 2e-83 34.2 %
:RPS:SCOP  4->262 1nm2A1  c.19.1.1 * 5e-60 17.2 %
:RPS:SCOP  248->293 2hh8A1  d.358.1.1 * 8e-04 16.3 %
:HMM:SCOP  2->312 1nm2A1 c.19.1.1 * 1e-66 38.5 %
:RPS:PFM   6->288 PF00698 * Acyl_transf_1 2e-41 37.0 %
:HMM:PFM   6->293 PF00698 * Acyl_transf_1 1.9e-36 30.0 277/318  
:BLT:SWISS 1->310 FABD_BACSU 3e-67 43.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80775.1 GT:GENE fabD GT:PRODUCT malonyl CoA-acyl carrier protein transacylase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1275429..1276373 GB:FROM 1275429 GB:TO 1276373 GB:DIRECTION + GB:GENE fabD GB:PRODUCT malonyl CoA-acyl carrier protein transacylase GB:NOTE 314 aa, similar to sp:FABD_BACSU MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE (EC 2.3.1.39) from Bacillus subtilis (317 aa); 43.5% identity in 310 aa overlap CPE1069 GB:PROTEIN_ID BAB80775.1 LENGTH 314 SQ:AASEQ MAKLGFLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFSDPEGLLNKTEFTQPAIITTNMAILTALDKLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAPFHCSMLQPAAEKLEDELNKISINKLNGIVMSNVKGEAYLEDDNIIELLTSQVKKPVLFINDIEKMIESGVDTFIEIGPGKALSGFVKKINKNVTVLNVEDLKSLEKTLSKLREMEVL GT:EXON 1|1-314:0| BL:SWS:NREP 1 BL:SWS:REP 1->310|FABD_BACSU|3e-67|43.5|310/317| BL:PDB:NREP 1 BL:PDB:REP 3->305|3ezoA|3e-53|39.1|302/307| RP:PDB:NREP 1 RP:PDB:REP 2->308|3eenA|2e-83|34.2|307/314| RP:PFM:NREP 1 RP:PFM:REP 6->288|PF00698|2e-41|37.0|276/297|Acyl_transf_1| HM:PFM:NREP 1 HM:PFM:REP 6->293|PF00698|1.9e-36|30.0|277/318|Acyl_transf_1| RP:SCP:NREP 2 RP:SCP:REP 4->262|1nm2A1|5e-60|17.2|239/243|c.19.1.1| RP:SCP:REP 248->293|2hh8A1|8e-04|16.3|43/127|d.358.1.1| HM:SCP:REP 2->312|1nm2A1|1e-66|38.5|244/254|c.19.1.1|1/1|FabD/lysophospholipase-like| OP:NHOMO 2415 OP:NHOMOORG 1013 OP:PATTERN -------------------------------------------------------------------- 224191223341-165399-9444G4989995987852331E4B--111111211--311E9-1J2HL7J21111----111111111111111111--111111511121111111111111111111111111111122111F2373355811111111112117A9S311111111111111111111117111111113111111111144112111211111111131111111111111111111111-111111-1-1111111111111111111111132111111111111111111111111111111111111122111111111171441111112--1111111211111111111211124111111111433111122411111111111111-223231222211233511211112131212121111122111111111111121111111111111111111111111111111111111111121223267566422236666272121211112331121112113323111111111111112121111421111331111112223115132212M911111111111111111111111111122111-132111322222322222222222221-11111111---71421211115155211-2111112122222111111213326331211111111111111111111111123333323323211112222221122161111111111111111122222122113322131522112222534211111111111131111111211212222211111111111--------------1-1-------------------------1111111111141 1132ao2-1---11257B5G9FDLRPK222333FF65545666433ECEIC9AA67LCA777111----1--1-1------1111121--A17211----1-3111-152H43422-2---12221-21232-2121-1-1-2211221-1113132111111641-112743351122H222221133C211112313 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 310 STR:RPRED 98.7 SQ:SECSTR TEEEEEEEccTTcccTTTTHHHHHHcTHHHHHHHHHHHHHTccHHHHHHHccHHHHTcHHHHHHHHHHHHHHHHHHHHTTccEEEEEEEcTTHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHccTTcEEEEEEEcccHHHHHHHHHHHHTTccEEEEEEEETTEEEEEEEHHHHHHHHHHHHTTTccEEEccccccTTcGGGHHHHHHHHHHHTTccccccccccEETTTTEEcccHHHHHHHHHHHHHccEEHHHHHHHHHHTTccEEEEcccccHHHHHHHHHcTTcEEEEcccHHHHHHHHHHHcH#### DISOP:02AL 314-315| PSIPRED ccEEEEEcccccccHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccccEEEEEEcccccEEEEccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcccc //