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Clostridium perfringens str. 13 (cper0)
Gene : gde
DDBJ      :gde          probable glycogen debranching enzyme
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  66/915 : Eukaryota  120/199 : Viruses  0/175   --->[See Alignment]
a.102.1
:672 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   283->658 2cqsA PDBj 7e-37 14.2 %
:RPS:SCOP  296->657 2jf4A1  a.102.1.9 * 3e-32 13.4 %
:HMM:SCOP  273->658 1v7wA1 a.102.1.4 * 3.4e-59 29.8 %
:RPS:PFM   17->232 PF12439 * GDE_N 7e-34 38.2 %
:RPS:PFM   293->648 PF06202 * GDE_C 5e-71 40.6 %
:HMM:PFM   281->650 PF06202 * GDE_C 8.4e-150 51.5 365/370  
:HMM:PFM   17->234 PF12439 * GDE_N 3e-57 32.3 217/224  
:BLT:SWISS 296->654 GDE_CANFA 5e-23 29.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82042.1 GT:GENE gde GT:PRODUCT probable glycogen debranching enzyme GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2687746..2689764) GB:FROM 2687746 GB:TO 2689764 GB:DIRECTION - GB:GENE gde GB:PRODUCT probable glycogen debranching enzyme GB:NOTE 672 aa, similar to pir:H75549 glycogen debranching enzyme-related protein from Deinococcus radiodurans (strain R1) (804 aa); 29.9% identity in 445 aa overlap CPE2336 GB:PROTEIN_ID BAB82042.1 LENGTH 672 SQ:AASEQ MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILSNLNEEINIDGKLHQLSSCKYTDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYGKNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLKFSKTVDKNKIQLTPQLNKDINIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLCTIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAGYPWFLDWGRDAMIAINGLTLSTGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTVDASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKAYKEGTKFSIKMDEEDSLINAGSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAKKVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFEELYTPYGLRSLSRDNKDYHGIYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEAVDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYAQAWSVGEMLRVYYEDILGNQKKLKKVHKDIFI GT:EXON 1|1-672:0| BL:SWS:NREP 1 BL:SWS:REP 296->654|GDE_CANFA|5e-23|29.1|358/1533| SEG 251->266|ekiieneekrinnlkn| SEG 460->481|aallknkfekeekneyeelakk| RP:PDB:NREP 1 RP:PDB:REP 283->658|2cqsA|7e-37|14.2|373/822| RP:PFM:NREP 2 RP:PFM:REP 17->232|PF12439|7e-34|38.2|212/223|GDE_N| RP:PFM:REP 293->648|PF06202|5e-71|40.6|350/370|GDE_C| HM:PFM:NREP 2 HM:PFM:REP 281->650|PF06202|8.4e-150|51.5|365/370|GDE_C| HM:PFM:REP 17->234|PF12439|3e-57|32.3|217/224|GDE_N| GO:PFM:NREP 2 GO:PFM GO:0004135|"GO:amylo-alpha-1,6-glucosidase activity"|PF06202|IPR010401| GO:PFM GO:0005978|"GO:glycogen biosynthetic process"|PF06202|IPR010401| RP:SCP:NREP 1 RP:SCP:REP 296->657|2jf4A1|3e-32|13.4|337/500|a.102.1.9| HM:SCP:REP 273->658|1v7wA1|3.4e-59|29.8|356/0|a.102.1.4|1/1|Six-hairpin glycosidases| OP:NHOMO 235 OP:NHOMOORG 205 OP:PATTERN ------1111111111---------------------------1----11222--------111---- --2-1-----------------------------------------------------------------------------------11111111----1-----1------------------------------11-----1-1111111--11---------11121------------1-1--------------------------------------------------------------------------------------------------------------------------------------------------------1----1111-1----1-1--1-1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------11--------1-------------------------------------------111----1-----1111------11-1-31-------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------111-------111-----------------------------------------------------------------------1- ---1111--------1111-11111111111111111111111111--111111111111111111-1--11--111-11111111-----11---111----1---1--11-1111111-11-11-3-866-21211111-11111--111-111111131--11--1----1---------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 654 STR:RPRED 97.3 SQ:SECSTR #################TTccccccTTccHHHHGGGHHHHHHHHHHHTTccccccTTccccccHHHHccccccEEEEEEccccccccEEEEEEEETTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEccTTcEE#EEEEccccTTccEEEEEEEEEEEEEEETTTccEEEEEEEEEEcccEEEEcTTcccEEEEEEcEEEEEEEEEEcccccTTTccccccHHHHHHHHHHHHHHHHHHHHHHHHTTcEEEcccccTTcTTcccHHHHHHHHHccGGGTHHHHHHHHHTTccccccccccccEEHHHHHHHHHTTTTTHHcHHHHHHHHHHHTTccTTcccccEEEEEEcTTccccTTHHHHHHHHHHHHHHHHccGGGGGcEEcTcTTccEEHHHHHHHHHHHHHTcccTTccccccTccccTcTTccTTTcccccccccEEHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHccccccccEEcTTccEEccTTcccccEEHHHHHHHHHTTcHHHHHHHHHHHHHEETTEEccEEcccccccGGGTTGGGccTTcTTcTcEEGGGHHHHHHHHHHTTccHHHHHHHHHHHcGGGHHHHcccTTccEEEEccTTcTTTTcEEEcccTHHHHHHHHHHHTTccccEEETcEEEcTTc PSIPRED ccccHHHcccHHHccccEEEEEccccccccHHHHccccccEEEEEEEccccccccEEEEEEccEEEEEccEEEEEEEEEccccccHHHHHHHHHccccccEEEEEEccEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEEccHHHHccccccEEEEEccccEEEEEccccccccEEEEEcccccccccccEEcccccHHHHHccccHHHcccccEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEcccccccEEEcccccHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccEEccccHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc //