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Clostridium perfringens str. 13 (cper0)
Gene : glgB.1
DDBJ      :glgB         amylase
Swiss-Prot:GLGB1_CLOPE  RecName: Full=1,4-alpha-glucan-branching enzyme 1;         EC=2.4.1.18;AltName: Full=Glycogen-branching enzyme 1;         Short=BE 1;AltName: Full=1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1;

Homologs  Archaea  13/68 : Bacteria  578/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:674 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   49->650 1m7xB PDBj e-154 46.2 %
:RPS:PDB   36->624 2d0fA PDBj 8e-76 11.4 %
:RPS:SCOP  64->594 2fhbA5  c.1.8.1 * 5e-64 11.2 %
:HMM:SCOP  44->154 1m7xA1 b.1.18.2 * 1e-27 36.4 %
:HMM:SCOP  160->552 1m7xA3 c.1.8.1 * 3.4e-102 31.0 %
:HMM:SCOP  553->656 1m7xA2 b.71.1.1 * 1.1e-34 38.8 %
:RPS:PFM   52->135 PF02922 * CBM_48 6e-14 42.5 %
:RPS:PFM   206->341 PF00128 * Alpha-amylase 3e-15 34.3 %
:RPS:PFM   561->656 PF02806 * Alpha-amylase_C 7e-13 38.9 %
:HMM:PFM   205->276 PF00128 * Alpha-amylase 1.9e-17 33.8 71/316  
:HMM:PFM   283->504 PF00128 * Alpha-amylase 3.4e-08 19.8 187/316  
:HMM:PFM   558->655 PF02806 * Alpha-amylase_C 5.1e-24 39.1 87/93  
:HMM:PFM   52->134 PF02922 * CBM_48 3.7e-22 43.8 80/84  
:BLT:SWISS 1->674 GLGB1_CLOPE 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB79769.1 GT:GENE glgB.1 GT:PRODUCT amylase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 80480..82504 GB:FROM 80480 GB:TO 82504 GB:DIRECTION + GB:GENE glgB GB:PRODUCT amylase GB:NOTE 674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap CPE0063 GB:PROTEIN_ID BAB79769.1 LENGTH 674 SQ:AASEQ MTLVEVKDDKLEIKPVRLRKEKYKTQLKNKIFNEDDLYLFHEGRNYNAYNFMGAHFTSENRKRGVRFTLWAPRAKNIFLVGDFSNWETKEENKLERINETGLWSIFIPRLKEGIKYKYYIEQEDGKAVLKADPYGIYSEVRPNTASILCEKTKIRWSDKKWLNKREETNYFESPINIYELHLGSWKRKDEDEFLSYDELSIILPKYIKEMGYTHVEFMPLNEHPLDASWGYQVTGYYSITSRYGDIKGLKRLINALHKEDIGVILDWVPGHFCKDEQGLYMFDGTPTYEYEEKWKADNKGWGTFNFDLGKPEVKSFLISNAFYFINEFHIDGLRVDAVSNMLYLNYGRNHGEWVPNIYGGNENLEAIQFIKELNEAIKTYSKGVITIAEESTSWPNVTNDTEYGGLGFDFKWNMGWMNDTLEYNELDPIYRKYHHNKLTFPMMYNHSEKFILPISHDEVVHGKKSLIDKMQGDYWNKLANLRAYMAYMYGHPGKKLMFMGCEFGQFIEWREYEELEWKLIDKFDMHRKTHNFFKDLNNFYKNNSELWELDYDQDGFQWIDADNNEQSIYIFIRKSKNIEKYKIFVCNFTPMVYYDFNIGVPEKGVYREIFNTDKEEYGGSGQVIKGNLFSRKGWCHNQQYTLTIKVPPMAVSVFERIIEENKTEEKIVKEDKYI GT:EXON 1|1-674:0| SW:ID GLGB1_CLOPE SW:DE RecName: Full=1,4-alpha-glucan-branching enzyme 1; EC=2.4.1.18;AltName: Full=Glycogen-branching enzyme 1; Short=BE 1;AltName: Full=1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1; SW:GN Name=glgB1; OrderedLocusNames=CPE0063; SW:KW Complete proteome; Glycogen biosynthesis; Glycosyltransferase;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->674|GLGB1_CLOPE|0.0|100.0|674/674| GO:SWS:NREP 3 GO:SWS GO:0005978|"GO:glycogen biosynthetic process"|Glycogen biosynthesis| GO:SWS GO:0016757|"GO:transferase activity, transferring glycosyl groups"|Glycosyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| BL:PDB:NREP 1 BL:PDB:REP 49->650|1m7xB|e-154|46.2|574/591| RP:PDB:NREP 1 RP:PDB:REP 36->624|2d0fA|8e-76|11.4|570/637| RP:PFM:NREP 3 RP:PFM:REP 52->135|PF02922|6e-14|42.5|80/82|CBM_48| RP:PFM:REP 206->341|PF00128|3e-15|34.3|134/296|Alpha-amylase| RP:PFM:REP 561->656|PF02806|7e-13|38.9|90/95|Alpha-amylase_C| HM:PFM:NREP 4 HM:PFM:REP 205->276|PF00128|1.9e-17|33.8|71/316|Alpha-amylase| HM:PFM:REP 283->504|PF00128|3.4e-08|19.8|187/316|Alpha-amylase| HM:PFM:REP 558->655|PF02806|5.1e-24|39.1|87/93|Alpha-amylase_C| HM:PFM:REP 52->134|PF02922|3.7e-22|43.8|80/84|CBM_48| GO:PFM:NREP 8 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02922|IPR004193| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02922|IPR004193| GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| GO:PFM GO:0003824|"GO:catalytic activity"|PF02806|IPR006048| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02806|IPR006048| GO:PFM GO:0043169|"GO:cation binding"|PF02806|IPR006048| RP:SCP:NREP 1 RP:SCP:REP 64->594|2fhbA5|5e-64|11.2|509/563|c.1.8.1| HM:SCP:REP 44->154|1m7xA1|1e-27|36.4|110/0|b.1.18.2|1/1|E set domains| HM:SCP:REP 160->552|1m7xA3|3.4e-102|31.0|390/0|c.1.8.1|1/1|(Trans)glycosidases| HM:SCP:REP 553->656|1m7xA2|1.1e-34|38.8|103/106|b.71.1.1|1/1|Glycosyl hydrolase domain| OP:NHOMO 1397 OP:NHOMOORG 758 OP:PATTERN -------222222221------------------------------1---21---------1------ 124-211222222-12322-22--3222222222222222222322212221222232----212--321111111111--1311---22221111---211-1131731111111112211111-----------333-----111573442221111111113133353111111112111333------3-333332332333323-222-2333113-3-2-------22--------------------2--11-----11--11-1-----11222121211111111111111-------------223---222231-12-------4-2112214241-131-22--11111-22-1---3-2-114----------123322222222------------32323222412-1224432433222-1---1134331--22222222122-3134-------------------------------1----2122222-22213332222222221222222---2221-2---1-34---32212---------123231-111-312122111-322-11--1-2314413-----------------------1122213311--2-321111-1-111111-11-----2112------13111111111111111-111111111111111111111111---331323232322323211111111--111111111111-------------2---1222222-22121221----------21222222222222222222111111111-11111111111112-44444444------2-----------------2----------1--1111---1-----21231-211251 --12112----111211-1111111111111111111111111111-1111111111-1111111111-1111-111-11111111---12111111112111112-11-21412221-1-11111-1-381-11111111-111111112-11111116CF11111112-12131443*223224453144------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 643 STR:RPRED 95.4 SQ:SECSTR ####################EcccTTccEEEEETTcccccGGGcccTTTcccccccTTcHHGccEEEEEEEETTcccEEEEETTTTEEEEEEcEEEEccEEEEEEEEccccccEEEEEEEEETTEEEEEETTEEEccccccccEEEcTTccccHHHHHccEEEEcGGGTccccGGGcccTTccEETTEEEEccccHHHHHHTHHHHHTTTcccEEEEcccEEccccccccccccEEEEEcTTTccHHHHHHHHHHHHccTTccccEEEEEEccTTcTTTcTTcccccccTTTcTTcTTGGGccEEETTTEEcEETTEEEEEccHHTTcTTcHHHHHHcTTTcccEEEETTTTTcccTTcccccHHHHHHHHHHHHHHHHHcTTcEEEEccccccGGGTTHcccTcccccEEccTTTTHHHHHHHHTcccTTcccccccHHHHHHHHHTTccHHHHHHcEEEcccTTcccHHHHTTTcHHHHHHHHHHHTTcccEEEEETTGGGTcccccTTTTcccccGHGGccTTcHHHHHHHHHHHHHHHcHHHHccTTcHHcEEEEEEEETTTTEEEEEEEcccHHcEEEEEEEcccEEEcGGGGTccTTcEEEETTTccEEEccTTcEEEEccccEEcccccccccccccEEEccEEEEcEEccccGGG########### DISOP:02AL 658-671| PSIPRED cEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHccccEEccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEEccccccEEEEEEEcccccEEEEccccEEEEEccccccEEEEcccccccccccccccccccccccccEEEEEEEEccccccccccEEcHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccHHcccHHHcccccccEEcccHHHHHHHHHHcccHHHHHHcccccccccccccccEEEcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEEEccccccEEEEEEcccccccccEEEEcccccEEEEEEccccHHHccccccccccEEEccccccccccEEEEEEcccEEEEEEEccccccccccccHHHccc //