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Clostridium perfringens str. 13 (cper0)
Gene : hemN
DDBJ      :hemN         probable coproporphyrinogen III oxidase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  845/915 : Eukaryota  74/199 : Viruses  0/175   --->[See Alignment]
c.1.28
:377 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->368 1oltA PDBj 9e-29 23.6 %
:RPS:PDB   4->283 2a5hA PDBj 4e-29 10.4 %
:RPS:SCOP  4->375 1oltA  c.1.28.2 * 2e-97 23.2 %
:HMM:SCOP  2->379 1oltA_ c.1.28.2 * 2.7e-122 39.3 %
:RPS:PFM   13->175 PF04055 * Radical_SAM 1e-12 31.6 %
:RPS:PFM   251->364 PF06969 * HemN_C 1e-17 34.2 %
:HMM:PFM   251->365 PF06969 * HemN_C 2.9e-28 30.4 115/118  
:HMM:PFM   8->178 PF04055 * Radical_SAM 9.1e-26 27.4 164/166  
:HMM:PFM   222->274 PF05801 * DUF840 0.00029 34.0 53/114  
:BLT:SWISS 5->376 HEMN_BACSU 5e-73 36.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81742.1 GT:GENE hemN GT:PRODUCT probable coproporphyrinogen III oxidase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2327545..2328678) GB:FROM 2327545 GB:TO 2328678 GB:DIRECTION - GB:GENE hemN GB:PRODUCT probable coproporphyrinogen III oxidase GB:NOTE 377 aa, similar to gpu:AP001511_232 coproporphyrinogen III oxidase from Bacillus halodurans (385 aa); 40.3% identity in 370 aa overlap CPE2036 GB:PROTEIN_ID BAB81742.1 LENGTH 377 SQ:AASEQ MDKISLYIHIPFCAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVLEADELECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYGVNRISMGLQAKQDNLLKGLGRIHNYKTFKENFLLAKKVGFNNINVDLMFGLPNQRLNEWEETLREIISLEPAHISAYSLIIEEGTAFYNLYENDKLKLPTEEEERKMYHLAKKILEENGFNQYEISNYAKEGKECRHNLAYWNMDNWIGVGSAAASYINGKRIKNISSVEKYINSINEKREAVEEIINNSKNDNMEEFMFMGLRKINGIDENEFKNRFSMNINDVYGEILNKYIDEGLLIRESGRIFLSEKGIEISNIIMADFLL GT:EXON 1|1-377:0| BL:SWS:NREP 1 BL:SWS:REP 5->376|HEMN_BACSU|5e-73|36.0|372/379| BL:PDB:NREP 1 BL:PDB:REP 4->368|1oltA|9e-29|23.6|360/434| RP:PDB:NREP 1 RP:PDB:REP 4->283|2a5hA|4e-29|10.4|259/400| RP:PFM:NREP 2 RP:PFM:REP 13->175|PF04055|1e-12|31.6|155/164|Radical_SAM| RP:PFM:REP 251->364|PF06969|1e-17|34.2|114/117|HemN_C| HM:PFM:NREP 3 HM:PFM:REP 251->365|PF06969|2.9e-28|30.4|115/118|HemN_C| HM:PFM:REP 8->178|PF04055|9.1e-26|27.4|164/166|Radical_SAM| HM:PFM:REP 222->274|PF05801|0.00029|34.0|53/114|DUF840| GO:PFM:NREP 6 GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| GO:PFM GO:0004109|"GO:coproporphyrinogen oxidase activity"|PF06969|IPR010723| GO:PFM GO:0005737|"GO:cytoplasm"|PF06969|IPR010723| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF06969|IPR010723| GO:PFM GO:0055114|"GO:oxidation reduction"|PF06969|IPR010723| RP:SCP:NREP 1 RP:SCP:REP 4->375|1oltA|2e-97|23.2|371/436|c.1.28.2| HM:SCP:REP 2->379|1oltA_|2.7e-122|39.3|377/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 1647 OP:NHOMOORG 920 OP:PATTERN -----1-------------------------------------------------------------- 1111211111111111111-11--1111111111111111121111111111111111--1111212112211111111342-22222331111111--22222222222222222222222221222222222222221111121222222111111111112221322111111111111111111111122222222222222222222222222222211111111121211111111111111111111---11---------111-----1111111111111111111111111111111111111111111111132334333333323232332222243332222-332212111122222422-2222212112124221123433333233333332-1121122225111222433211222212233233333222222222222211232-----------111111111-1111-----1212222212222222233332223333334222222222222222223322223222122222222222111222211111111111111212111212222231212343333332322222222223222223322222222233333234333333543351-2133211111132223222333233322-32223332323332222232223322222332332233232332222222211333233333333--12111111111222123332222111122222211211222222222222223222322211111111123333333333333322121211111111-12122222211111111211-----------1------1---1111211222222121 ----111-----1-1----------------------------------------------------------------------------------------11--121212111--1111111-1113B1-1131-1-111111112-11-11-113----111-------311-11C111111113-11113---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 363 STR:RPRED 96.3 SQ:SECSTR #cEcccccEEEEEEEcccccTTcTTTTTTTccccccHHHHHHHHHHHTcTTHGcccEEEEEEccTTcccHHHHHHHHHHHHTcTTTHccEEEEEccHHHHcGGGccHHHHHHGGGccEEEEEccccHHHHHcGGGccHHHHHHHHHHHHTTccEEEEEEEccTTTTccHHHHHHHHHHHHTTEEEEEEEEccccTTcTcccccTTcGGGcccHHHHHHHHHTTcTTccGGGccEEEEEETTTTEEEEccccEEEcTTccEEEEEccTTcccccccTTTTTcccHHHHHHHTTcEEcEEEEccHHHHHHHHHHHHHHHHcEEEHHHHHHHTTccHHHHTHHHHHHHHH####HHHTTcEEEcccEEEEc######### PSIPRED ccEEEEEEEccccccccEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHccccEEEEEcccccHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccEEccccccccccccccHHHccccccEEEEEcccEEEEccEEEEEcccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEccEEEEcHHHHHHHHHHHHHHcc //