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Clostridium perfringens str. 13 (cper0)
Gene : hlyB
DDBJ      :hlyB         probable hemolysin
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  876/915 : Eukaryota  111/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.37.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   222->341 3i8nA PDBj 2e-14 36.0 %
:BLT:PDB   355->432 2rk5A PDBj 7e-05 33.3 %
:RPS:PDB   129->345 3bp1B PDBj 9e-38 9.2 %
:RPS:PDB   352->429 3dedB PDBj 3e-06 22.7 %
:RPS:SCOP  199->347 2ooxE1  d.37.1.1 * 1e-22 14.8 %
:RPS:SCOP  349->429 2pliA1  d.145.1.4 * 3e-10 20.0 %
:HMM:SCOP  213->275 1nf7A3 d.37.1.1 * 3.6e-11 33.9 %
:HMM:SCOP  280->338 1nf7A3 d.37.1.1 * 5e-08 22.0 %
:RPS:PFM   21->201 PF01595 * DUF21 4e-20 28.8 %
:RPS:PFM   355->429 PF03471 * CorC_HlyC 1e-07 28.0 %
:HMM:PFM   10->203 PF01595 * DUF21 5.3e-57 39.6 182/183  
:HMM:PFM   355->432 PF03471 * CorC_HlyC 4.6e-23 40.3 77/81  
:HMM:PFM   218->276 PF00571 * CBS 5.3e-10 28.6 56/57  
:HMM:PFM   288->338 PF00571 * CBS 7.1e-09 21.6 51/57  
:BLT:SWISS 21->429 Y260_SYNY3 7e-53 37.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80143.1 GT:GENE hlyB GT:PRODUCT probable hemolysin GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 557024..558361 GB:FROM 557024 GB:TO 558361 GB:DIRECTION + GB:GENE hlyB GB:PRODUCT probable hemolysin GB:NOTE 445 aa, similar to gp:AF051356_4 putative hemolysin from Streptococcus mutans (445 aa); 32.8% identity in 412 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT CPE0437 GB:PROTEIN_ID BAB80143.1 LENGTH 445 SQ:AASEQ MDPSPSILPKIILILVLILINAFFAAAEMAMVSVNKSKIKMLAEKGNKKALLLKKVLKSPGNFLSTIQIGITFAGFFASASAATSISETLAQFMYKLNIPYGNEISVILITVLLSYITLVFGELLPKRIALQKPEEIALMAIRPINVISKISTPFVKILSASTNLFIKILGLNKSEDKETVSKDEIKSMISIGQESGVIDKTEKDMLDNIFEFDHKVVKEVMTPRGEVFAIKSTTPNETIAKKLISEQFSRVPVYNETRDNIVGILYLKDFFEAVVKVGVDNIKLDQLIRPAYFVLENKAIDDLFKELQDSKQHMAVIIDEYGGFSGIVTIEDLIEEVMGDILDEYDDSENYIDKIDNNTYVVDGLLTLDKLNDYLNLNLESQNIETIGGFVVNLIGNIPQSENQMVEYDNLSFQVCKTNKKRIEKLKIYLNNSTSFNSDVILNN GT:EXON 1|1-445:0| BL:SWS:NREP 1 BL:SWS:REP 21->429|Y260_SYNY3|7e-53|37.5|405/448| TM:NTM 3 TM:REGION 9->31| TM:REGION 56->78| TM:REGION 103->125| SEG 7->20|ilpkiililvlili| SEG 42->58|laekgnkkalllkkvlk| SEG 69->87|igitfagffasasaatsis| SEG 366->380|lltldklndylnlnl| BL:PDB:NREP 2 BL:PDB:REP 222->341|3i8nA|2e-14|36.0|114/118| BL:PDB:REP 355->432|2rk5A|7e-05|33.3|78/86| RP:PDB:NREP 2 RP:PDB:REP 129->345|3bp1B|9e-38|9.2|217/250| RP:PDB:REP 352->429|3dedB|3e-06|22.7|75/83| RP:PFM:NREP 2 RP:PFM:REP 21->201|PF01595|4e-20|28.8|170/184|DUF21| RP:PFM:REP 355->429|PF03471|1e-07|28.0|75/81|CorC_HlyC| HM:PFM:NREP 4 HM:PFM:REP 10->203|PF01595|5.3e-57|39.6|182/183|DUF21| HM:PFM:REP 355->432|PF03471|4.6e-23|40.3|77/81|CorC_HlyC| HM:PFM:REP 218->276|PF00571|5.3e-10|28.6|56/57|CBS| HM:PFM:REP 288->338|PF00571|7.1e-09|21.6|51/57|CBS| RP:SCP:NREP 2 RP:SCP:REP 199->347|2ooxE1|1e-22|14.8|149/179|d.37.1.1| RP:SCP:REP 349->429|2pliA1|3e-10|20.0|80/84|d.145.1.4| HM:SCP:REP 213->275|1nf7A3|3.6e-11|33.9|62/0|d.37.1.1|1/2|CBS-domain| HM:SCP:REP 280->338|1nf7A3|5e-08|22.0|59/0|d.37.1.1|2/2|CBS-domain| OP:NHOMO 2642 OP:NHOMOORG 1006 OP:PATTERN ------------------------433333411----------12122---11------------112 2221313544433333333-35--3333333-54444355243553436443756233--334253459942222222112-2222223333-322---22313342411333333333333333221112221312222211122244233222221111113213233221222221222232311111-344444443444444442-5435445322234333333343222222222222222222231212222222211222221111121111111111111111111111111111111111111111111111-22231112222212123312222-122122-13311-11-------112412333322222233333323333333333333334-223225233332333244444433322323243333222333333332333233422222222222222122222222222222-2222233323333333333333333333323333333422443324334322322253323431111111222333222222432323232222222222333333121111111111113111111111--122554333233424444434744444553434--3422221-21155234555555555554-4555555555555555554555444445555445444555555555555552-55555556455512332222233332323333333333332233333333344335344444444344443444332323323244434444434444333333333222222253111111222222223321111--11-1111111---1111111111111111113 ----11--321--11--1-----1-1----------------------111111--1--------1----1----11-11-----1---2------------1211-12-4665464122213-552416E41435131231232-21-111-52133531-2113-2112221121127121-25225-52211-215 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 68.3 SQ:SECSTR ################################################################################################################################cccccccEEEEEEEEEEEEEcTTccEEEEEEEEEEETTccEEEcHHHHHHHHHTccccHHHHHHHHHHHHHHHHTcccEEEEEEGGGGTTcccccccEEccccccccccccccGGGGTTcEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEcHHHHHHHHccccHHHHHHHHHHHHHHTcccEEEEEEEEcccTTEEEEEEEEcccccccccccTcccGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHcTTcEEEETTEEEEEEEETETEEEEEEEEEc############# DISOP:02AL 1-2, 40-50, 179-180, 437-441| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEEEHHHHHHHHHccccccccHHHHccccEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEHHHHHHHHHcccccccccccHHHEEccccEEEEEccccHHHHHHHHcccccccccccHHHHHHHHHHccccccccEEEEccEEEEEEEEcccEEEEEEEEEccccccccEEEEcc //