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Clostridium perfringens str. 13 (cper0)
Gene : hlyE
DDBJ      :hlyE         probable hemolysin III
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  543/915 : Eukaryota  66/199 : Viruses  0/175   --->[See Alignment]
:213 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   50->206 PF03006 * HlyIII 9e-15 32.5 %
:HMM:PFM   8->206 PF03006 * HlyIII 5.9e-56 32.7 199/221  
:BLT:SWISS 8->213 YQFA_SHIFL 9e-45 48.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81621.1 GT:GENE hlyE GT:PRODUCT probable hemolysin III GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2193942..2194583) GB:FROM 2193942 GB:TO 2194583 GB:DIRECTION - GB:GENE hlyE GB:PRODUCT probable hemolysin III GB:NOTE 213 aa, similar to sp:HLY3_BACCE HEMOLYSIN III (HLY-III) from Bacillus cereus (219 aa); 42.9% identity in 203 aa overlap. 6 putative transmembrane regions were found by PSORT. CPE1915 GB:PROTEIN_ID BAB81621.1 LENGTH 213 SQ:AASEQ MSEELNFYTREEEFANAITHGIGVVLAIVGAVLLIVFSSLSRDVYKIISFTIFGITLFLLYLGSTLYHSIPNKKVKRFLRIIDHSSIYLLIAGTYTPYVLVCLRDNKKAMAIFIMIWVITILGIVFKFICINKFENLSTLLYIFMGWSVIFVVKDVWQRVPHMAVFWLLIGGLFYTLGCIFFVLDRMPYNHAIWHLFVMGGSISHFFSVILYL GT:EXON 1|1-213:0| BL:SWS:NREP 1 BL:SWS:REP 8->213|YQFA_SHIFL|9e-45|48.8|205/219| TM:NTM 7 TM:REGION 17->39| TM:REGION 46->68| TM:REGION 83->104| TM:REGION 111->133| TM:REGION 136->158| TM:REGION 164->186| TM:REGION 191->213| SEG 21->36|gigvvlaivgavlliv| RP:PFM:NREP 1 RP:PFM:REP 50->206|PF03006|9e-15|32.5|157/221|HlyIII| HM:PFM:NREP 1 HM:PFM:REP 8->206|PF03006|5.9e-56|32.7|199/221|HlyIII| GO:PFM:NREP 1 GO:PFM GO:0016021|"GO:integral to membrane"|PF03006|IPR004254| OP:NHOMO 716 OP:NHOMOORG 609 OP:PATTERN -------------------------------------------------------------------- -1--11-1111-1----11-11--111111111111-1---111--1-11111111----111111--1-1-111111-111------1111-1---------11---1---------------1---------1-111--1111--------------------------------------11111--1-11222222221222222111111222---1222111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11212221222121-111122211----11--1111-1---------111-1---1-------1111-11111111111111111-11111111-1--111111111111-----11-1111------------------1---------------------------------------11111111111-11111111-1111-1-1--11--11---2112-1-11---111111111-11--12-2-1111--1111-1-1-------11----1------------------------11111-11-111111111111111111111111---1-1-------11111111111111111-111111111111111111111111---1111111111111111111111111-111111111111---1----------1111---------------1111111---1-11111111-11111111---------11111111111111111222222221111---111----111111-11111111---------------------111-1-----12- ----11---------------------------------------------------------------------------------1-------------------122-225413122123222-1-4B3-3-6211241222-111121-3122211111111-11122111-----------------23----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-5| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHc //