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Clostridium perfringens str. 13 (cper0)
Gene : licC
DDBJ      :licC         probable lic-1 operon protein
Swiss-Prot:             

Homologs  Archaea  53/68 : Bacteria  253/915 : Eukaryota  89/199 : Viruses  0/175   --->[See Alignment]
c.68.1
:227 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->226 1jylA PDBj 1e-59 45.6 %
:RPS:PDB   3->97 3dk5A PDBj 3e-18 27.2 %
:RPS:SCOP  1->226 1jykA  c.68.1.13 * 2e-60 45.6 %
:HMM:SCOP  1->226 1jykA_ c.68.1.13 * 6.2e-40 29.8 %
:RPS:PFM   3->67 PF00483 * NTP_transferase 4e-14 53.8 %
:HMM:PFM   3->57 PF00483 * NTP_transferase 3e-12 43.6 55/248  
:BLT:SWISS 1->221 LICC_HAEIN 6e-40 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80335.1 GT:GENE licC GT:PRODUCT probable lic-1 operon protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 789373..790056 GB:FROM 789373 GB:TO 790056 GB:DIRECTION + GB:GENE licC GB:PRODUCT probable lic-1 operon protein GB:NOTE 227 aa, similar to sp:LICC_HAEIN LICC PROTEIN from Haemophilus influenzae Rd (233 aa); 35.3% identity in 221 aa overlap CPE0629 GB:PROTEIN_ID BAB80335.1 LENGTH 227 SQ:AASEQ MRAILLAAGMGTRLRPLTLDTPKSLIEVNGRPLLERQIEFLRERGVEEIIVVTGYLAEKFDYLKDKYGVKLVNNDKYDIYNNIYTMYLVREYLENTYVVDADVYISENFLLEKPETSMYFSANKQGFKGEWKLSFDEDLKVNDIEVGDDEGYILCGVSYWDKKDTDIIVKELEDMVENGDFSELYWDDIVKNNISKLDIRIEKISENSIYEIDNLEELDYVKSVVEK GT:EXON 1|1-227:0| BL:SWS:NREP 1 BL:SWS:REP 1->221|LICC_HAEIN|6e-40|35.3|221/233| SEG 73->84|nndkydiynniy| BL:PDB:NREP 1 BL:PDB:REP 1->226|1jylA|1e-59|45.6|226/228| RP:PDB:NREP 1 RP:PDB:REP 3->97|3dk5A|3e-18|27.2|92/442| RP:PFM:NREP 1 RP:PFM:REP 3->67|PF00483|4e-14|53.8|65/238|NTP_transferase| HM:PFM:NREP 1 HM:PFM:REP 3->57|PF00483|3e-12|43.6|55/248|NTP_transferase| GO:PFM:NREP 2 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00483|IPR005835| GO:PFM GO:0016779|"GO:nucleotidyltransferase activity"|PF00483|IPR005835| RP:SCP:NREP 1 RP:SCP:REP 1->226|1jykA|2e-60|45.6|226/229|c.68.1.13| HM:SCP:REP 1->226|1jykA_|6.2e-40|29.8|225/0|c.68.1.13|1/1|Nucleotide-diphospho-sugar transferases| OP:NHOMO 505 OP:NHOMOORG 395 OP:PATTERN 112-211211111132-122223-512321-22111-----111121111222122--1-11-1--12 -1-11------------------------------------1-1-----------------------1111-------123211-----111-2-----------1-1-----------------11-111-1121211223442-1111-11111121111112222222111112121111-----1--11-111111111111112------111-------------2---------------------------------------------------------11111112111-----------------------11-22-------2-111112111-12---5211------1-11111-12----111---------22--1-------------------11-----1--1--1-1---1----11------------------------11------------------------------1--111-111-----------------------------------1-11-1-1--11----1---------12--1--1--------1---1--------1-----------1-212121-1-------11--111-----------1----1--------1--1---1-12---------------------------------------------------------------------------------------------1----------1-1-----1--1112-11-111111111-1-11111-21121111-11----------1--1----------1111111-11-------2--------------11-----------1-----------------111-1111-1 --1111-------11--11-------------------------------1------------1-1111-22-1-111111-------------------------1122211121-11111112112-342-111-11-11111-1------1---11111-111-21211111-11-----112244-22--1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 226 STR:RPRED 99.6 SQ:SECSTR cEEEEEEccccGGGccGGGcccGGGcEETTEEHHHHHHHHHHHHcccEEEEEEcccHHHTTTHHHHTTcccEEEEccccccHHHHHHHHHTTccTTcEEccccTTccHHHHHHHHHHHHHHccTTcEEEEEEccccccccccEEEEEEEETTEEEEEEEEccccHHHHTEccccGGGccccTTcEEEEEEEEEEHHHHHHHHHccccHHHHHHTcTTHHHHHHHTc# DISOP:02AL 227-228| PSIPRED cEEEEEEccccccccHHHccccccEEEEccEEHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHcccEEEEEEEEEEccHHHccccHHHHHHHHHHccccccEEEEEcccccEEEEEEcccccEEEEEEEEEcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEcccEEEEcccHHHHHHHHHHHcc //