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Clostridium perfringens str. 13 (cper0)
Gene : lon
DDBJ      :lon          probable ATP-dependent proteinase La
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  721/915 : Eukaryota  186/199 : Viruses  1/175   --->[See Alignment]
c.37.1d.14.1
:619 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   154->447 1sxjD PDBj 3e-10 30.1 %
:BLT:PDB   446->619 1xhkB PDBj 1e-21 35.1 %
:RPS:PDB   154->419 2chgB PDBj 2e-22 22.3 %
:RPS:SCOP  153->403 1jr3A2  c.37.1.20 * 2e-25 27.8 %
:RPS:SCOP  446->619 1xhkA  d.14.1.10 * 2e-32 34.7 %
:HMM:SCOP  146->429 1qvrA2 c.37.1.20 * 3.5e-45 30.7 %
:HMM:SCOP  449->617 1rreA_ d.14.1.10 * 1.3e-43 43.6 %
:RPS:PFM   153->380 PF05496 * RuvB_N 2e-10 36.7 %
:RPS:PFM   449->616 PF05362 * Lon_C 6e-27 44.5 %
:HMM:PFM   421->618 PF05362 * Lon_C 7.5e-36 37.7 191/205  
:HMM:PFM   146->210 PF05496 * RuvB_N 8.1e-10 41.5 65/234  
:HMM:PFM   183->355 PF00004 * AAA 3.1e-18 33.6 116/130  
:BLT:SWISS 153->615 LON2_BACSU e-106 46.9 %
:PROS 264->279|PS00676|SIGMA54_INTERACT_2
:PROS 527->535|PS01046|LON_SER
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82341.1 GT:GENE lon GT:PRODUCT probable ATP-dependent proteinase La GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(3009333..3011192) GB:FROM 3009333 GB:TO 3011192 GB:DIRECTION - GB:GENE lon GB:PRODUCT probable ATP-dependent proteinase La GB:NOTE 619 aa, similar to gpu:AP001517_173 ATP-dependent proteinase La from Bacillus halodurans (556 aa); 45.2% identity in 465 aa overlap. 1 putative transmembrane region was found by PSORT CPE2635 GB:PROTEIN_ID BAB82341.1 LENGTH 619 SQ:AASEQ MNSELGVESQVEALKDIINNILDEGAFRARVIRFKVQNYINSTDPYERLYGLSKIVSEGKGLSEVPTEETINEALEDVCAMISDAIARRYVQNKIEKEVEQFLMEKQEKYVDELRVNIMKKKKGPENAKTEKKLEELEELDERVPNKNIMSLLRPDSFDEVVGQERAVKSLLSKLASPYPQHIILYGPPGVGKTTAARIALETAKKLKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPEPKPGLVTEAHGGILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYLFDKGAPADFVLIGATTREPGEINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLEEGLEKKIASYTIEGRRAVNILADAYGHAIYGLEGEVPEDLEITSKDLNEVVSIGRFTPYEILENLEEKEVGHVYGLGVSGFLGSTIEIEATAFKAKKKGAGKIRFNDTAGSMAKDSVFNAASVIKRLTDKDINDYDIHVNVIGGGKIDGPSAGAAITICIMSALLEKPIRQDLAITGEISLRGKIKPVGGIFEKIYGARRKGIKLVTVPKDNENEIPKGLEDIEVKAISSIEELMEIAFN GT:EXON 1|1-619:0| BL:SWS:NREP 1 BL:SWS:REP 153->615|LON2_BACSU|e-106|46.9|454/552| PROS 264->279|PS00676|SIGMA54_INTERACT_2|PDOC00579| PROS 527->535|PS01046|LON_SER|PDOC00803| SEG 129->142|ktekkleeleelde| SEG 473->481|kakkkgagk| BL:PDB:NREP 2 BL:PDB:REP 154->447|1sxjD|3e-10|30.1|239/328| BL:PDB:REP 446->619|1xhkB|1e-21|35.1|171/185| RP:PDB:NREP 1 RP:PDB:REP 154->419|2chgB|2e-22|22.3|211/222| RP:PFM:NREP 2 RP:PFM:REP 153->380|PF05496|2e-10|36.7|177/232|RuvB_N| RP:PFM:REP 449->616|PF05362|6e-27|44.5|164/186|Lon_C| HM:PFM:NREP 3 HM:PFM:REP 421->618|PF05362|7.5e-36|37.7|191/205|Lon_C| HM:PFM:REP 146->210|PF05496|8.1e-10|41.5|65/234|RuvB_N| HM:PFM:REP 183->355|PF00004|3.1e-18|33.6|116/130|AAA| GO:PFM:NREP 6 GO:PFM GO:0006281|"GO:DNA repair"|PF05496|IPR008824| GO:PFM GO:0006310|"GO:DNA recombination"|PF05496|IPR008824| GO:PFM GO:0009378|"GO:four-way junction helicase activity"|PF05496|IPR008824| GO:PFM GO:0004176|"GO:ATP-dependent peptidase activity"|PF05362|IPR008269| GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF05362|IPR008269| GO:PFM GO:0006508|"GO:proteolysis"|PF05362|IPR008269| RP:SCP:NREP 2 RP:SCP:REP 153->403|1jr3A2|2e-25|27.8|209/240|c.37.1.20| RP:SCP:REP 446->619|1xhkA|2e-32|34.7|170/185|d.14.1.10| HM:SCP:REP 146->429|1qvrA2|3.5e-45|30.7|231/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 449->617|1rreA_|1.3e-43|43.6|165/182|d.14.1.10|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 1729 OP:NHOMOORG 952 OP:PATTERN ------------------11-1-111111111121221111112312211222-2222212111-2-- 222-1-----------1----1--11-----111111----111----------------1-1-1--111-------------1132122222122111112311111-1-------11111111---------1-64554---32-------------------------1-1---------222222314322222222222222222222222223421221------221--------------------------1--1111111--111----111------1-1111-1---1-------1------11---111-2245644444443442233454513321411333443354344422211333-111311111122121111111111111111112-1211112111113221121111111111111122222111111111111111111111111111111111111211111111121112114332321111222222113222222212222221122322122133321223222232222222223322134544232233224254623345222223633211111111111111111111121122222-211121121111111222111111211-2411111111111121112222222222-22222222222122222221111111111212121121121121221222111111111111111111222222111113424111111111111221222222211131444433434333333332222222223111211111112112211111111111111211111222222222312211111-111111111111111111111-1211121--- 1---221-1---222222222221212222222222222222222211111222122222222221221211212-1-111122221--23222231112232435-24142222322121221521223T2-3131121222221211121151121237413221211422221112Y3222243652421131221 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- DISOP:02AL 1-2, 142-157, 477-482| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccEEEcccEEEEEccHHccHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHcccHHHEEEEEEEEEcccEEEEEEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEEEcccccEEEcccHHHHHHHHHHccccEEEEcHHHHHHHHHccccEEEEEEccHHHHHHHHcc //