[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : lysS
DDBJ      :lysS         lysine-tRNA ligase
Swiss-Prot:SYK_CLOPE    RecName: Full=Lysyl-tRNA synthetase;         EC=6.1.1.6;AltName: Full=Lysine--tRNA ligase;         Short=LysRS;

Homologs  Archaea  66/68 : Bacteria  902/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.104.1
:501 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->498 3e9hA PDBj e-149 55.0 %
:RPS:PDB   15->498 3e9hA PDBj 2e-76 53.9 %
:RPS:SCOP  13->149 1bbuA1  b.40.4.1 * 6e-25 37.2 %
:RPS:SCOP  156->499 1bbuA2  d.104.1.1 * e-110 51.6 %
:HMM:SCOP  12->148 1e1oA1 b.40.4.1 * 1.5e-42 49.2 %
:HMM:SCOP  156->499 1bbuA2 d.104.1.1 * 5.7e-118 43.0 %
:RPS:PFM   63->139 PF01336 * tRNA_anti 5e-05 45.1 %
:RPS:PFM   158->495 PF00152 * tRNA-synt_2 4e-52 38.4 %
:HMM:PFM   158->498 PF00152 * tRNA-synt_2 4.2e-97 34.5 316/323  
:HMM:PFM   63->140 PF01336 * tRNA_anti 2e-17 41.9 74/76  
:BLT:SWISS 1->501 SYK_CLOPE 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82171.1 GT:GENE lysS GT:PRODUCT lysine-tRNA ligase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2820866..2822371) GB:FROM 2820866 GB:TO 2822371 GB:DIRECTION - GB:GENE lysS GB:PRODUCT lysine-tRNA ligase GB:NOTE 501 aa, similar to sp:SYK_BACSU LYSYL-TRNA SYNTHETASE (EC 6.1.1.6) (LYSINE-TRNA LIGASE) (LYSRS) from Bacillus subtilis (499 aa); 55.2% identity in 498 aa overlap CPE2465 GB:PROTEIN_ID BAB82171.1 LENGTH 501 SQ:AASEQ MSNEEINIHEAEEQLSEQEMLRRQKLVELQEAGKDPFDVYKVERTHSSADVKDNFEELEGKEVKVAGRLMSKRGQGKVVFADLADLPGKIQLFIKIDNVGEEALKEFKTFDLGDWVAATGEVFKTKMGEVSVKVTSFELICKSLKPLPEKWHGLKDPDLRYRQREVDIITNPEVKDTFIKRSQIVKAIREFLDNRGFLEVDTPILSPIAGGAAARPFITHHNALDIDMYLRIATELYLKRLIVAGFEKVYEMGKNFRNEGVSVRHNPEFTAIELYEAYADYNDMMEIMENMIAYVCEKVNGSTKVTYEGTEIDFTPPWRRITMVDAVKEFAGIDFNEIKSDEEAQAIAKEKNLEFPKPLDKVTKGEVLNMLFEEYGEDKLIQPTFLIDYPVEISPLTKKKRGNEMFTERFEGFVYGREVCNAYSELNDPIVQRERFEQQAREREYGDDEAYMLDEEFMSALETGMPPTGGLGIGIDRMIMFLTDSSSIRDVILFPTMKPQK GT:EXON 1|1-501:0| SW:ID SYK_CLOPE SW:DE RecName: Full=Lysyl-tRNA synthetase; EC=6.1.1.6;AltName: Full=Lysine--tRNA ligase; Short=LysRS; SW:GN Name=lysS; OrderedLocusNames=CPE2465; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Magnesium; Metal-binding; Nucleotide-binding;Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->501|SYK_CLOPE|0.0|100.0|501/501| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| SEG 432->444|qrerfeqqarere| BL:PDB:NREP 1 BL:PDB:REP 14->498|3e9hA|e-149|55.0|476/484| RP:PDB:NREP 1 RP:PDB:REP 15->498|3e9hA|2e-76|53.9|475/484| RP:PFM:NREP 2 RP:PFM:REP 63->139|PF01336|5e-05|45.1|71/74|tRNA_anti| RP:PFM:REP 158->495|PF00152|4e-52|38.4|328/337|tRNA-synt_2| HM:PFM:NREP 2 HM:PFM:REP 158->498|PF00152|4.2e-97|34.5|316/323|tRNA-synt_2| HM:PFM:REP 63->140|PF01336|2e-17|41.9|74/76|tRNA_anti| GO:PFM:NREP 7 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| RP:SCP:NREP 2 RP:SCP:REP 13->149|1bbuA1|6e-25|37.2|137/144|b.40.4.1| RP:SCP:REP 156->499|1bbuA2|e-110|51.6|341/342|d.104.1.1| HM:SCP:REP 12->148|1e1oA1|1.5e-42|49.2|132/143|b.40.4.1|1/1|Nucleic acid-binding proteins| HM:SCP:REP 156->499|1bbuA2|5.7e-118|43.0|342/342|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 3033 OP:NHOMOORG 1165 OP:PATTERN 1121212222222222134434411111111-111111111112212111222122222222213-22 3331223222232123322-232223222222333333332-11222221122223221111233232--222222222223122233222222222-12222222222222222222222222322222222222333333333222222222222222222222222222222222222223333322333333333323333334233333333333323333333333233333333333333233333332433433234433333323334443333333433333333333333333333333333433232333323334333333343322222343522333333233333222222222332224222211111222222212222211111111111-221221111213333333333333122211122122111111111111223222211111111----1111111111111111111111122222222222222222222222222222222222222222222222222222222222222222222222343332222232232333333333444434442212222222222222222222222222223333333322222222222222222223-2232323133333333334444445444-44444444444444444444443333333333333333333333343333432333333333333223333333333333323333333333333433333333333322222222222222222223333333333333333333333333333333333333332224444441111122222122223-23332221112332422223433323222222 3312434-94322356443344335333334343333333233333323433243222443444445332444445435554444433-33243323331322555243564633282111242442916L316572111413533221242242433222532321443435533324V4344342663463454444 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 489 STR:RPRED 97.6 SQ:SECSTR ############cccTTHHHHHHHHHHHHHHTTccTTccccccccccHHHHHHHHTTccccEEEEEEEEEEEEccccEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHccTTcEEEEEEEEEEcTTccEEEEEEEEEEEEccccccccccHccccTHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHTTcEEcccccEEcccccccccccEEEETTTTEEEEEccccHHHHHHHHHTTccEEEEEEEEEccccccTTcccEEEEEEEEEETccHHHHHHHHHHHHHHHHHHHHcccEEEETTEEEEcccccEEEEHHHHHHHHTcccTTccccHHHHHHHHHHTTccccTTccHHHHHHHHHHHHHHHTGGGccccEEEEcccGGGcTTcccccccTTcccEEEEEETTEEEEEEEEccccHHHHHHHHHHHHHHHHTTcTTcccccHHHHHHHHTccccEEEEEEEHHHHHHHHHTcccGGGcccccccccHH DISOP:02AL 1-19, 499-501| PSIPRED cccccccccHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEcccccHHHHHHHHHcccccEEEEEEEEEEcccccEEEEEEEEEEEEcccccccccccccccHHHHHHccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEccccccccccEEEEEccccEEEEEccHHHHHHHHHHcccccEEEEEEEEEccccccccccHHHEEHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccEEEEccHHHccHHHccccccccEEEEEEEEEccEEEEcccHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEccccccccc //