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Clostridium perfringens str. 13 (cper0)
Gene : malR
DDBJ      :malR         probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  560/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.93.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->296 1zvvA PDBj 3e-45 35.1 %
:RPS:PDB   1->332 1efaA PDBj 8e-54 25.2 %
:RPS:SCOP  3->57 1bdhA1  a.35.1.5 * 1e-17 45.5 %
:RPS:SCOP  61->334 1rzrA2  c.93.1.1 * 2e-46 29.4 %
:HMM:SCOP  1->59 2bjcA1 a.35.1.5 * 6.3e-18 49.2 %
:HMM:SCOP  59->334 1dbqA_ c.93.1.1 * 1.1e-61 33.6 %
:RPS:PFM   3->47 PF00356 * LacI 2e-11 57.8 %
:RPS:PFM   58->298 PF00532 * Peripla_BP_1 2e-30 33.2 %
:HMM:PFM   3->47 PF00356 * LacI 1.4e-23 55.6 45/46  
:HMM:PFM   59->319 PF00532 * Peripla_BP_1 1e-20 24.1 253/279  
:HMM:PFM   31->74 PF07951 * Toxin_R_bind_C 0.00081 28.6 42/214  
:BLT:SWISS 1->333 MALR_CLOBU e-103 56.6 %
:PROS 3->21|PS00356|HTH_LACI_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82046.1 GT:GENE malR GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2696149..2697162) GB:FROM 2696149 GB:TO 2697162 GB:DIRECTION - GB:GENE malR GB:PRODUCT probable transcriptional regulator GB:NOTE 337 aa, similar to sp:MALR_CLOBU TRANSCRIPTIONAL REGULATORY PROTEIN MALR from Clostridium butyricum (335 aa); 61.9% identity in 333 aa overlap CPE2340 LacI family GB:PROTEIN_ID BAB82046.1 LENGTH 337 SQ:AASEQ MNIKDIARLAGVGVSTVSRVINDHPDVKDETREKILKIIKESNYIPNNSARILKKNNTNNIGVLVKGVFNPFFAEMINIIGNRINEAGYTMILQQNDYATEDDVDNLIAFVKEKRLQGIICLGGNFLNINDESFQFLDIPVVLTSVNTLSKESKSKFSSIGIDNVLAAKASIQYLIDKGHRNIGILLGEKNDVGISGLRLEGYKKALEENNIPYSEENVFIGDYDYSGAYRVTKEIVNNRKDITAIFSISDIMAVGAAKSVIDQGLQVGEDISIMGFDGMDISKYYNPGITTVKQPKKNMANNSIDLLLALLAKKEEHKHIIFETKIIERESCKKVV GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 1->333|MALR_CLOBU|e-103|56.6|332/335| PROS 3->21|PS00356|HTH_LACI_1|PDOC00366| SEG 307->320|lllallakkeehkh| BL:PDB:NREP 1 BL:PDB:REP 1->296|1zvvA|3e-45|35.1|291/332| RP:PDB:NREP 1 RP:PDB:REP 1->332|1efaA|8e-54|25.2|325/328| RP:PFM:NREP 2 RP:PFM:REP 3->47|PF00356|2e-11|57.8|45/46|LacI| RP:PFM:REP 58->298|PF00532|2e-30|33.2|235/261|Peripla_BP_1| HM:PFM:NREP 3 HM:PFM:REP 3->47|PF00356|1.4e-23|55.6|45/46|LacI| HM:PFM:REP 59->319|PF00532|1e-20|24.1|253/279|Peripla_BP_1| HM:PFM:REP 31->74|PF07951|0.00081|28.6|42/214|Toxin_R_bind_C| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00356|IPR000843| GO:PFM GO:0005622|"GO:intracellular"|PF00356|IPR000843| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00356|IPR000843| RP:SCP:NREP 2 RP:SCP:REP 3->57|1bdhA1|1e-17|45.5|55/56|a.35.1.5| RP:SCP:REP 61->334|1rzrA2|2e-46|29.4|269/272|c.93.1.1| HM:SCP:REP 1->59|2bjcA1|6.3e-18|49.2|59/0|a.35.1.5|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 59->334|1dbqA_|1.1e-61|33.6|271/282|c.93.1.1|1/1|Periplasmic binding protein-like I| OP:NHOMO 4375 OP:NHOMOORG 566 OP:PATTERN -------------------------------------------------------------------- 7782d-12669111-----------A------1111147C6-39GRI1DEB2PPO-14--7666P5JNQF5CAAAEKH4---4-----1111-1-----1-7-419-749--------------------------78854---C----------------------1-1-------------44-22DC-C8BBBBAB98C7BAA989FEDDBBAB869F29678AAA9A4Q54444444444444442256C681882A416BB8856855AA7555777876755566666566666555544555555555633366678418E22222229296511478BG444122A--------J1-489991-31-1EBB3-----2-533--------4434344434A---3--3134D--PEEBSLMUVSJH659156C74533856--------23311--1------------------------------392512441489AA986333344AG5454367882544--5669-41155825F----1--2----------------1----1--3------------------A-----------------------------BAG6-77-84B5565733323412233115-------------JJHG7JEDCCEDEEECC-CCACECCCEECDDFGBFGBNPMJJ889DDCCDCDDDDCBDCBCOA9BBBBE7-IGHHGHHFGHHH---------------86C333659144443334----------574444355822325-655----------9899BBBBBDB9FF87AAAAA7871111---2----------------5-------------------------568723B544-1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------1-----------4--1-----------2--------4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 336 STR:RPRED 99.7 SQ:SECSTR ccHHHHHHTTTccHHHHHHHHTTcccccTHHHHHHHHHHHHHTccccHHHHHHTTccccEEEEEEccTTcHHHHHHHHHHHHHHHHTTcEEEEEEcccccHHHHHHHHHHHHHTTccEEEEEccccHHHHHHHHHHcccccEEccccEccccTTccccEEEEcHHHHHHHHHHHHHHTTcccEEEEEccTTcHHHHHHHHHHHHHHHHTTTccccGcEEEEccccHHHHHHHHHHHHHTTccccEEEEccHHHHHHHHHHHHTTTcccTTTcEEEEEEccGGGGGccccccEEEccHHHHHHHHHHHHHHHHTTcccccEEEEccEEEccccTccc# DISOP:02AL 50-55| PSIPRED ccHHHHHHHHcccHHHHHHEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccEEEEEcccccccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHccccccHHEEEEccccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccc //