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Clostridium perfringens str. 13 (cper0)
Gene : nifU
DDBJ      :nifU         probable nitrogen fixation protein
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  606/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
d.224.1
:142 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->123 2z7eC PDBj 1e-37 55.4 %
:RPS:PDB   1->111 2e5aA PDBj 8e-19 6.0 %
:HMM:SCOP  1->122 1xjsA_ d.224.1.2 * 1.9e-47 50.4 %
:RPS:PFM   2->124 PF01592 * NifU_N 1e-36 55.3 %
:HMM:PFM   3->122 PF01592 * NifU_N 4.4e-55 60.0 120/127  
:BLT:SWISS 3->123 NIFU_AQUAE 4e-38 56.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81490.1 GT:GENE nifU GT:PRODUCT probable nitrogen fixation protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2063817..2064245) GB:FROM 2063817 GB:TO 2064245 GB:DIRECTION - GB:GENE nifU GB:PRODUCT probable nitrogen fixation protein GB:NOTE 142 aa, similar to pir:A69273 nifU protein (nifU-1/nifU-2) from Archaeoglobus fulgidus (153 aa); 60.7% identity in 122 aa overlap CPE1784 GB:PROTEIN_ID BAB81490.1 LENGTH 142 SQ:AASEQ MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCGSAIASSSMATELIKGKTVEEAWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQRQGLEPWDMKEHSHDIHEHVHG GT:EXON 1|1-142:0| BL:SWS:NREP 1 BL:SWS:REP 3->123|NIFU_AQUAE|4e-38|56.2|121/157| BL:PDB:NREP 1 BL:PDB:REP 3->123|2z7eC|1e-37|55.4|121/137| RP:PDB:NREP 1 RP:PDB:REP 1->111|2e5aA|8e-19|6.0|100/329| RP:PFM:NREP 1 RP:PFM:REP 2->124|PF01592|1e-36|55.3|123/126|NifU_N| HM:PFM:NREP 1 HM:PFM:REP 3->122|PF01592|4.4e-55|60.0|120/127|NifU_N| GO:PFM:NREP 3 GO:PFM GO:0005506|"GO:iron ion binding"|PF01592|IPR002871| GO:PFM GO:0016226|"GO:iron-sulfur cluster assembly"|PF01592|IPR002871| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF01592|IPR002871| HM:SCP:REP 1->122|1xjsA_|1.9e-47|50.4|121/0|d.224.1.2|1/1|SufE/NifU| OP:NHOMO 1009 OP:NHOMOORG 812 OP:PATTERN -----------------------21111111111--------11212111332-----------1--- 1221----------1--------------------------111--------------------111-------------11211111-----------------1---1---------------111111111111222111123-11111-22-----------12111---------------11111111111111111111111122211111111111111111111111111111111111111111------1-11--1111111---1111111111111111111111111111111111111111111111111112111111111111441111111111-11-11222-1112221111-2-1----------1------11111--------------1------1----------------------1111------------11--12-111111111111111111111111111111-----11111111111122221111222222122112111111211221222121121121111111111111122-5422221112111111121214322222133111111111111111111111111222112---1-1121111111111111112111--11--2111111112111-1111111111-111111111111111111112121111111111111111111111111111--111111111111---12222211111----11111111111111111111111112-11111111111112111----------11111111111111--------------1111112222----------1--------------------------11111211111- 1111111-311111211111111111111111111111-1111-11111111111111111111111111221112222211111111-121111111111-12221-21223222111---1131121492-21611111114---1111-13121111-1111111115111111-1I1111132531321111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 131 STR:RPRED 92.3 SQ:SECSTR cTTHHHHHHHHHcHHHHTTTccEEEEEEEEEEccEEEEEEEEEEETTEEEEEEEEccTTTccHHHHHHHHHHHTTccccccTTTHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHTTc######ccccccc##### DISOP:02AL 130-142| PSIPRED ccHHHHHHHHHHccccccccccccEEEEEcccccccEEEEEEEEEccEEEEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccc //