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Clostridium perfringens str. 13 (cper0)
Gene : parE
DDBJ      :parE         DNA topoisomerase IV subunit B
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  180/199 : Viruses  6/175   --->[See Alignment]
c.52.1d.122.1d.14.1d.173.1d.175.1e.11.1
:650 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->391 1kijA PDBj 3e-73 44.3 %
:BLT:PDB   434->644 3fofD PDBj 2e-57 57.1 %
:RPS:PDB   21->393 3cwvB PDBj 3e-81 23.5 %
:RPS:PDB   418->650 1bgwA PDBj 4e-45 19.2 %
:RPS:SCOP  9->197 1j6rA  d.173.1.2 * 2e-46 7.7 %
:RPS:SCOP  199->325 1pyyA3  d.175.1.1 * 2e-15 10.8 %
:RPS:SCOP  314->624 1dc1A  c.52.1.11 * 1e-70 13.8 %
:HMM:SCOP  9->233 1s16A2 d.122.1.2 * 1.7e-61 46.4 %
:HMM:SCOP  237->412 1kijA1 d.14.1.3 * 1.5e-49 44.2 %
:HMM:SCOP  414->649 1bjtA_ e.11.1.1 * 3.7e-78 49.6 %
:RPS:PFM   237->407 PF00204 * DNA_gyraseB 6e-43 48.2 %
:RPS:PFM   438->537 PF01751 * Toprim 1e-08 35.4 %
:RPS:PFM   588->644 PF00986 * DNA_gyraseB_C 2e-20 64.9 %
:HMM:PFM   237->409 PF00204 * DNA_gyraseB 2.4e-57 45.0 171/173  
:HMM:PFM   584->644 PF00986 * DNA_gyraseB_C 2.2e-32 62.3 61/65  
:HMM:PFM   37->187 PF02518 * HATPase_c 5.2e-17 25.0 104/111  
:HMM:PFM   439->538 PF01751 * Toprim 6.4e-09 17.9 84/96  
:BLT:SWISS 3->650 GYRB_BACSU e-174 49.0 %
:PROS 442->450|PS00177|TOPOISOMERASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81775.1 GT:GENE parE GT:PRODUCT DNA topoisomerase IV subunit B GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2368714..2370666) GB:FROM 2368714 GB:TO 2370666 GB:DIRECTION - GB:GENE parE GB:PRODUCT DNA topoisomerase IV subunit B GB:NOTE 650 aa, similar to sp:GYRB_BACHD DNA GYRASE SUBUNIT B (EC 5.99.1.3) from Bacillus halodurans (637 aa); 48.9% identity in 648 aa overlap CPE2069 GB:PROTEIN_ID BAB81775.1 LENGTH 650 SQ:AASEQ MYMSNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKETGTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF GT:EXON 1|1-650:0| BL:SWS:NREP 1 BL:SWS:REP 3->650|GYRB_BACSU|e-174|49.0|629/638| PROS 442->450|PS00177|TOPOISOMERASE_II|PDOC00160| SEG 224->235|keesvskeyyse| SEG 576->585|eevkkkvgkg| BL:PDB:NREP 2 BL:PDB:REP 18->391|1kijA|3e-73|44.3|357/384| BL:PDB:REP 434->644|3fofD|2e-57|57.1|191/199| RP:PDB:NREP 2 RP:PDB:REP 21->393|3cwvB|3e-81|23.5|306/311| RP:PDB:REP 418->650|1bgwA|4e-45|19.2|229/679| RP:PFM:NREP 3 RP:PFM:REP 237->407|PF00204|6e-43|48.2|166/169|DNA_gyraseB| RP:PFM:REP 438->537|PF01751|1e-08|35.4|99/110|Toprim| RP:PFM:REP 588->644|PF00986|2e-20|64.9|57/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 237->409|PF00204|2.4e-57|45.0|171/173|DNA_gyraseB| HM:PFM:REP 584->644|PF00986|2.2e-32|62.3|61/65|DNA_gyraseB_C| HM:PFM:REP 37->187|PF02518|5.2e-17|25.0|104/111|HATPase_c| HM:PFM:REP 439->538|PF01751|6.4e-09|17.9|84/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 9->197|1j6rA|2e-46|7.7|182/197|d.173.1.2| RP:SCP:REP 199->325|1pyyA3|2e-15|10.8|111/120|d.175.1.1| RP:SCP:REP 314->624|1dc1A|1e-70|13.8|290/310|c.52.1.11| HM:SCP:REP 9->233|1s16A2|1.7e-61|46.4|211/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 237->412|1kijA1|1.5e-49|44.2|172/172|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 414->649|1bjtA_|3.7e-78|49.6|234/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1953 OP:NHOMOORG 1118 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222322222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111112111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-1221141211121111-111111111111111111-1-111111111-11111111111111----1-1111-----1-111111-121121111111211111122122233412211212213-992-4261112212332221221132422213913121111442222222F2222252391533432112 ---11--------------1-------------------1----------------------------------------------------------------------------------------------------------------------------------11--- STR:NPRED 644 STR:RPRED 99.1 SQ:SECSTR ######cccccGGGccccHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEEcccHHHHHHHHHHHHTHHHHTEEEEEEEEcccccccTTcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHTTccTTEEEEEEccccccccccccEEEEEEEEcTTTcccccccHHHHHHHHHHHHHHcTTcEEEEEETTTTEEEEEEcTTHHHHHHHHHHHHTTccccccccEEEEEEETTcccTEEEEEEEEEccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHHHHHTccccccGcGGGccHHHHTTTEEEEEEccGGGcccccccTTccccTTHHHHHHHHHHHHHHHHHTTcTTHHHHHTTTccHHHHHHHHHHHHHHTTHHHHHHHccccTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEETTEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHHHcEcccEHHHHHHHHHTTcccEEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHHHHHHHcccTTTcccHHHHHHHHHHHHTT DISOP:02AL 1-15, 402-425| PSIPRED cccccccccccHHHEEEEcccccHHcccccEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccEEcccccccccccEEEEEEEEEEEccccccccEEEEEccEEccEEEEEEEEccEEEEEEEEccEEEEEEEEcccccccccccccccccccEEEccccccEEEEEEEEcHHHHccccccHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEccHHHHHHHHHHccccccccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEccEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccEEEEEEccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccHHHcEEEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHcc //