[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : psdD
DDBJ      :psdD         probable phosphatidylserine decarboxylase precursor
Swiss-Prot:PSD_CLOPE    RecName: Full=Phosphatidylserine decarboxylase proenzyme;         EC=4.1.1.65;Contains:  RecName: Full=Phosphatidylserine decarboxylase alpha chain;Contains:  RecName: Full=Phosphatidylserine decarboxylase beta chain;

Homologs  Archaea  0/68 : Bacteria  372/915 : Eukaryota  143/199 : Viruses  0/175   --->[See Alignment]
:294 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   92->292 PF02666 * PS_Dcarbxylase 8e-26 37.8 %
:HMM:PFM   86->292 PF02666 * PS_Dcarbxylase 1.3e-59 40.9 198/203  
:HMM:PFM   39->93 PF08270 * PRD_Mga 0.00018 20.0 55/217  
:BLT:SWISS 1->294 PSD_CLOPE e-156 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB79734.1 GT:GENE psdD GT:PRODUCT probable phosphatidylserine decarboxylase precursor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(41300..42184) GB:FROM 41300 GB:TO 42184 GB:DIRECTION - GB:GENE psdD GB:PRODUCT probable phosphatidylserine decarboxylase precursor GB:NOTE 294 aa, similar to sp:DPSD_CLOPA PUTATIVE PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME (EC 4.1.1.65) from Clostridium pasteurianum (296 aa); 53.1% identity in 294 aa overlap CPE0028 GB:PROTEIN_ID BAB79734.1 LENGTH 294 SQ:AASEQ MIKIYNRKTKAYDVEQVAGLKYINWSYASPIGKSFLELFIKKKMFSKLYGNFCDSSLSKKKIKAFIDEFNIDMSLCNKNIDEFENFNDFFARTLTPEARPIDYSENILISPGDGRLSAFENIDLDKVVQIKGYTYSLKELIDDPKVAEEFEGGTCLILRLCPTDYHRFHFVDSGTCSESKKISGFYYSVNPIALNNVSELFCKNKREWSIFNSDNFGEILHVEVGATCVGTILQTYSPEKRVKKGEEKGYFKFGGSTTILFFKKDTIKIDSDIVEQTKLGFETKVNMGETIGHK GT:EXON 1|1-294:0| SW:ID PSD_CLOPE SW:DE RecName: Full=Phosphatidylserine decarboxylase proenzyme; EC=4.1.1.65;Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain;Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain; SW:GN Name=psd; Synonyms=psdD; OrderedLocusNames=CPE0028; SW:KW Complete proteome; Decarboxylase; Lyase; Phospholipid biosynthesis;Pyruvate; Zymogen. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->294|PSD_CLOPE|e-156|100.0|294/294| GO:SWS:NREP 3 GO:SWS GO:0016831|"GO:carboxy-lyase activity"|Decarboxylase| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0008654|"GO:phospholipid biosynthetic process"|Phospholipid biosynthesis| SEG 81->90|defenfndff| SEG 243->255|kkgeekgyfkfgg| RP:PFM:NREP 1 RP:PFM:REP 92->292|PF02666|8e-26|37.8|188/202|PS_Dcarbxylase| HM:PFM:NREP 2 HM:PFM:REP 86->292|PF02666|1.3e-59|40.9|198/203|PS_Dcarbxylase| HM:PFM:REP 39->93|PF08270|0.00018|20.0|55/217|PRD_Mga| GO:PFM:NREP 2 GO:PFM GO:0004609|"GO:phosphatidylserine decarboxylase activity"|PF02666|IPR003817| GO:PFM GO:0008654|"GO:phospholipid biosynthetic process"|PF02666|IPR003817| OP:NHOMO 599 OP:NHOMOORG 515 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------111111111111111-----------------------------------------------------1------------111111111111111111-111-11111111-11------11-----------------------------------------------------1--------------------------1----------112111111121111-11111111-----11-11-1-----------1---1-----------111-1--------------------1--1-1-----------------------------------------------------------------------------1----11111---------------------------1-----21111111111111-1111----------1-11112-1-1---1----1-----111111111--1----111111--1--1---1--12--111111111111111111111111-111111-11111------11111111111111-11-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111-11111111--111111-----------1111--------------------------------11 ----33------2211211222222121111111112222222111-111111512111111111111--111111111111111111-43121222222312332-2---21-111--1-111211216A1-211---121121--1--1---111-2----21-1-11712-1--1-----111--2121----1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 293-294| PSIPRED cEEEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHcccHHHccccccEEEEEEccccccccccccEEEEccccEEEEEEccccccEEEEccccEEHHHHcccccccHHHcccEEEEEEEccccEEEEEEccccEEEEEEEEccEEEEccHHHHHHcccHHcccEEEEEEEEEccccEEEEEEEEEEEEEEEEEEccccEEEEccccEEEEEcccEEEEEEEccccEEEccccccccccccccEEEEcHHcccc //