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Clostridium perfringens str. 13 (cper0)
Gene : rbsA
DDBJ      :rbsA         probable ribose ABC transporter
Swiss-Prot:RBSA_CLOPE   RecName: Full=Ribose import ATP-binding protein rbsA;         EC=3.6.3.17;

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:501 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   7->243 1g9xA PDBj 1e-28 30.4 %
:BLT:PDB   264->478 2it1B PDBj 8e-17 28.1 %
:RPS:PDB   4->478 3cmvG PDBj 1e-52 8.9 %
:RPS:SCOP  7->247 1b0uA  c.37.1.12 * 3e-40 20.2 %
:RPS:SCOP  262->486 1b0uA  c.37.1.12 * 6e-32 23.6 %
:HMM:SCOP  10->223 1ii8.1 c.37.1.12 * 9.6e-57 34.9 %
:HMM:SCOP  258->491 1g6hA_ c.37.1.12 * 4.8e-49 34.8 %
:RPS:PFM   47->174 PF00005 * ABC_tran 7e-12 33.1 %
:RPS:PFM   299->428 PF00005 * ABC_tran 4e-08 31.1 %
:HMM:PFM   47->174 PF00005 * ABC_tran 2.8e-21 34.2 117/118  
:HMM:PFM   299->428 PF00005 * ABC_tran 8.6e-16 34.0 103/118  
:BLT:SWISS 1->501 RBSA_CLOPE 0.0 100.0 %
:PROS 401->415|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|19->243|272->498

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81336.1 GT:GENE rbsA GT:PRODUCT probable ribose ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1902847..1904352) GB:FROM 1902847 GB:TO 1904352 GB:DIRECTION - GB:GENE rbsA GB:PRODUCT probable ribose ABC transporter GB:NOTE 501 aa, similar to gp:ECOUW82_115 high affinity ribose transport protein from Escherichia coli (501 aa); 52.2% identity in 492 aa overlap ATP-binding protein CPE1630 GB:PROTEIN_ID BAB81336.1 LENGTH 501 SQ:AASEQ MGERTPMLKMVGVSKSFPGVKALDNVSLMAYGGEVTALMGENGAGKSTLMKILSGVYKKDEGKIFIEGREVEVKGIKSAEEAGITIIHQELSVLNNLTISENIFLGNEKHSKFTGRINKKLLDERSKMFLEQIGCDIDPNRLVSTLNVGEKQMIEIAKALTKNARIIIMDEPTTALTDVETENLFKVIENLRKKGIAIIYISHRMEEIFKICHRVEVLRDGKYAGSAEIKDIDNDKLIAMMVGRTIEDQFPYRDVKKGDLALEVKNLSCKEGVKGASFTLRKGEILGIAGLMGSGRTELAKTIFGEYKRTSGEISLNGSPININCISDAINNGICYLSEDRKKEGCILGMSVGENMTLCNLKKYENKFKSLDKKEEAKDIEYYIKKINIKTPNKEQFIKNLSGGNQQKVILAKWLMLSPEVLIIDEPTRGIDVGAKKEIYELLNELKASGKAIIMISSDLPEVLGISDRIMVMSEGRISGELNRDEANQESIMKLAVGINN GT:EXON 1|1-501:0| SW:ID RBSA_CLOPE SW:DE RecName: Full=Ribose import ATP-binding protein rbsA; EC=3.6.3.17; SW:GN Name=rbsA; OrderedLocusNames=CPE1630; SW:KW ATP-binding; Cell membrane; Complete proteome; Hydrolase; Membrane;Nucleotide-binding; Repeat; Sugar transport; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->501|RBSA_CLOPE|0.0|100.0|501/501| GO:SWS:NREP 7 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0008643|"GO:carbohydrate transport"|Sugar transport| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 401->415|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|19->243|272->498| BL:PDB:NREP 2 BL:PDB:REP 7->243|1g9xA|1e-28|30.4|237/253| BL:PDB:REP 264->478|2it1B|8e-17|28.1|201/361| RP:PDB:NREP 1 RP:PDB:REP 4->478|3cmvG|1e-52|8.9|448/1167| RP:PFM:NREP 2 RP:PFM:REP 47->174|PF00005|7e-12|33.1|121/123|ABC_tran| RP:PFM:REP 299->428|PF00005|4e-08|31.1|118/123|ABC_tran| HM:PFM:NREP 2 HM:PFM:REP 47->174|PF00005|2.8e-21|34.2|117/118|ABC_tran| HM:PFM:REP 299->428|PF00005|8.6e-16|34.0|103/118|ABC_tran| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 7->247|1b0uA|3e-40|20.2|238/258|c.37.1.12| RP:SCP:REP 262->486|1b0uA|6e-32|23.6|225/258|c.37.1.12| HM:SCP:REP 10->223|1ii8.1|9.6e-57|34.9|212/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 258->491|1g6hA_|4.8e-49|34.8|230/254|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 49203 OP:NHOMOORG 1175 OP:PATTERN SSKARMJMYXXUXTZPnKONKMKXxNSdmThUHCDDFBHEGECSaQUiLP**k9ObPTSKSMLEZ18C QUpI*WUYppoUYPTNOKJ-Jc88Q*KKKKKInfggq***R*T*k*tapfaN***NJeEFrq*g*p****dZYYYvZXdO*goDAB9CTTSO7MEJK-1IIYNPKeOaKU88888888A99999JVQIUWLLVVbQgoo**NMN*YognyfgkYcSSLKLGLGdcal***aLQILLJLRJLIJkWbPLtnBXjz************************ip***ms***xy***bqrqpqnlooqqqoncgbbd*jadzxeQeakxxQQ**cZUapmjkmtsx*wr****vvttqnsyrtuggffegghihfff*rqiijtsvst***********p*pz***ennl*zm***otSG**vkXeloWZohpuQedXObTRRJKOMKOfX***WPu****************-kr*je*n***QC**************JJN**********SRSSSSSSvVZKSjZ*77567666557899CD99A88999A86A6KDADAC***********ywxzt********k********BO*xs*lujq******ZnnGXJPjZIJJJLJJRNQSnid**ShSxiUjwZZjLbdbSVaiRXWYSVlza*PNLUGIIIKHHAACDEEDDEGTHFLLKrntPrWbJUNySTVXUNSdVSTSSWbXVac5-BHQOL331333*w**X*xx***y***ww-*xwy*y*y*z***tuwvuv*****kmgqpmmnopoonmlolmm*rnmttrtV5************43JIEHDEFNOQOLI*j*bZZaXYLTUROXQVcOQSPQFTGLStbvvpux***q***zi***IHHFHIHHHLjpm*noooo**vzzRPNJJKJIKJEEDEA9PUTTLMMNA999A99A*CbBBACC-CCFCHFBQROEEOBFE99Bdt*YYp*quoEgN 1244gdE-RG6BTgOGCF9BGKDMCNFFF9CACIHI9FACBDDACADEGJKFWJDEJ89A9BG6D59636847AAA926889896A45-IP7CHECDABBA4DHFF4ILkpVcWjfYKIE9JYLxpB*F**o4mXvKHJBgDKqXDRIEEfEA*HYPRwIm*PpRXB*Wg*pgcSCBDA*CEF7JoZa*B*sFKzernL ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-2, 500-501| PSIPRED ccccccEEEEEEEEEEcccEEEEccccEEEcccEEEEEEccccccHHHHHHHHHccccccccEEEEEcEEcccccHHHHHHcccEEEEccHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHcEEEEEEccEEEEEccHHHccHHHHHHHHHccHHccccccccccccccEEEEEccEEccccccccEEEEccEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHcccEEcccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHccHHHcccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEEccEEEEEccHHHccHHHHHHHHccccc //