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Clostridium perfringens str. 13 (cper0)
Gene : recF
DDBJ      :recF         DNA repair and genetic recombination protein
Swiss-Prot:RECF_CLOPS   RecName: Full=DNA replication and repair protein recF;

Homologs  Archaea  0/68 : Bacteria  576/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:361 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->336 2o5vA PDBj 5e-24 25.9 %
:RPS:PDB   1->64 1e69A PDBj 4e-07 25.0 %
:RPS:SCOP  1->88 1f2t.1  c.37.1.12 * 9e-13 20.5 %
:HMM:SCOP  1->362 1w1wA_ c.37.1.12 * 3.3e-39 23.9 %
:HMM:PFM   2->353 PF02463 * SMC_N 1.9e-16 23.3 193/220  
:BLT:SWISS 1->361 RECF_CLOPS 0.0 100.0 %
:PROS 117->137|PS00617|RECF_1
:PROS 304->322|PS00618|RECF_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB79710.1 GT:GENE recF GT:PRODUCT DNA repair and genetic recombination protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 3566..4651 GB:FROM 3566 GB:TO 4651 GB:DIRECTION + GB:GENE recF GB:PRODUCT DNA repair and genetic recombination protein GB:NOTE 361 aa, similar to sp:RECF_BACSU RECF PROTEIN from Bacillus subtilis (370 aa); 41.2% identity in 359 aa overlap CPE0004 GB:PROTEIN_ID BAB79710.1 LENGTH 361 SQ:AASEQ MYIKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHRTNRDKELIEWNKDRAFIRLDVHKDRLDKIIDVNILKDGKKAISINSIKISKIGELIGTFNVVMFSPEDLKIVKESPGIRRRFIDMELSQLNKRYYHNLVQYNKVLHERNLVLKNKNINEEMLDIYDIQLAQYGENIIKTRLKYIEQLNKYSKEIHKEITSGKEEIEFKYISTVKDLDNIKDSMIKLLEQNRKKDIDKRATSIGPHRDDFNIYLNNIDAKIYGSQGQQRTSVLTIKFASLKIIKEITGEYPVLLLDDVLSELDFNRKRYVLTSIKNIQTVITCTGIEDLTSYLDENSKVFRVINGRIQC GT:EXON 1|1-361:0| SW:ID RECF_CLOPS SW:DE RecName: Full=DNA replication and repair protein recF; SW:GN Name=recF; OrderedLocusNames=CPR_0004; SW:KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA repair;DNA replication; DNA-binding; Nucleotide-binding; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->361|RECF_CLOPS|0.0|100.0|361/361| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009432|"GO:SOS response"|SOS response| PROS 117->137|PS00617|RECF_1|PDOC00539| PROS 304->322|PS00618|RECF_2|PDOC00539| SEG 92->105|kkaisinsikiski| SEG 304->311|vlllddvl| BL:PDB:NREP 1 BL:PDB:REP 3->336|2o5vA|5e-24|25.9|320/358| RP:PDB:NREP 1 RP:PDB:REP 1->64|1e69A|4e-07|25.0|64/263| HM:PFM:NREP 1 HM:PFM:REP 2->353|PF02463|1.9e-16|23.3|193/220|SMC_N| RP:SCP:NREP 1 RP:SCP:REP 1->88|1f2t.1|9e-13|20.5|88/288|c.37.1.12| HM:SCP:REP 1->362|1w1wA_|3.3e-39|23.9|330/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 580 OP:NHOMOORG 576 OP:PATTERN -------------------------------------------------------------------- ----111111111111112-111111111111111111111111111111111111111111111111111111111111111-----111111111--111111111111111111111--2-11111111111111111---11111111111111--111111111111111111111111111122-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-----------------------------------------------1-------------------------------------------11111111----11111111111111-1------------------------------------------------------------------------------1--------------111111111--1-1------------------------------11-111111111111111111111111111---1-11------111-1111111111111-1111111111111111111111111111111111111111111-1111111-----------------11111111111-1111111111111-1111111111111-11111111111----11111--------111111111111111----------1111---1111111---1-111111-------------------------1----------11 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 325 STR:RPRED 90.0 SQ:SECSTR cEEEEEEEEccTTccccEEEEcccEEEEEccTTTccTHHHHHHHHTcccccTTcccccTTcccccccEEEEEEEEETTEEEEEEEEE###ETTEEEEEETTEEEcGGGcccccEEEEcTTTTHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTT##cGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccc######EEEEEEccccTTTHHHHHHHTHHHHHHHTcccccGGGcEEEEEETTEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccGGGcccHHHHHHHHHHHHHcEEEEEEc######################### PSIPRED cEEEEEEEEcccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHccccEEEEEEEEEEcccEEEEEEEEEccccEEEEEccEEccHHHHHHHHccEEEEccccHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHccEEEEEEcHHHHHHHccccccEEEEcccEEEc //