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Clostridium perfringens str. 13 (cper0)
Gene : recN
DDBJ      :recN         DNA repair and genetic recombination protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  823/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:565 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->42 1us8A PDBj 4e-05 41.5 %
:BLT:PDB   21->68 1w1wB PDBj 6e-06 39.6 %
:RPS:PDB   2->45,431->504 1e69A PDBj 5e-08 27.0 %
:RPS:SCOP  11->222 1w44A  c.37.1.11 * 4e-20 19.7 %
:RPS:SCOP  431->506 1l7vC  c.37.1.12 * 3e-04 17.1 %
:HMM:SCOP  1->527 1w1wA_ c.37.1.12 * 1.5e-55 30.9 %
:RPS:PFM   14->504 PF02463 * SMC_N 4e-10 25.4 %
:HMM:PFM   2->506 PF02463 * SMC_N 6.1e-17 29.1 196/220  
:BLT:SWISS 1->557 RECN_BACHD 7e-98 35.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81521.1 GT:GENE recN GT:PRODUCT DNA repair and genetic recombination protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2093294..2094991) GB:FROM 2093294 GB:TO 2094991 GB:DIRECTION - GB:GENE recN GB:PRODUCT DNA repair and genetic recombination protein GB:NOTE 565 aa, similar to sp:RECN_BACSU DNA REPAIR PROTEIN RECN (RECOMBINATION PROTEIN N) from Bacillus subtilis (576 aa); 36.5% identity in 559 aa overlap CPE1815 GB:PROTEIN_ID BAB81521.1 LENGTH 565 SQ:AASEQ MLLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSKFNKDLIRTGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFINGRSNIKVNGRSIIVATLKKISSTLLDIHGQHNNQNLLNKEKHIMYLDDFGDSKLSEDLKEYGEKFSELKDIERKISELSNEGKDEKLLNYLEYQLNEIEEAKLRNGEEEELTERFNVLSNAEKIKNSLGISYNLLNGIESSVVDSLSVVNRELSNVEEHLEKIKNINSKIMEMYYEIQEMAREIRDICDESVYDGNELEEINSRMFKIASLKKKYGNSIAEILEYKNNILSQINNIKNSEKIIEDLLNEKSKVENVLSEIANRIHNKRIELSKVLEENIHKELAYVGLGKCRFEVLIEEDETFNFKGKDKVQFLISTNPGEPLKPMERIVSGGELSRIMLALKAVFIDKDKIPTVIFDEIDTGISGRVAQSVGEKMYEISTKHQVFCITHLPQIASMSDNHYMVRKKVIDNKTFSKVEPITYNQKIEEVGKMLGGVEMTSNTLLNAKEMIELADTKKETIKTFHT GT:EXON 1|1-565:0| BL:SWS:NREP 1 BL:SWS:REP 1->557|RECN_BACHD|7e-98|35.8|553/565| SEG 74->93|erlkeilddleieyddtlii| SEG 333->344|inniknsekiie| BL:PDB:NREP 2 BL:PDB:REP 2->42|1us8A|4e-05|41.5|41/129| BL:PDB:REP 21->68|1w1wB|6e-06|39.6|48/327| RP:PDB:NREP 1 RP:PDB:REP 2->45,431->504|1e69A|5e-08|27.0|118/263| RP:PFM:NREP 1 RP:PFM:REP 14->504|PF02463|4e-10|25.4|472/536|SMC_N| HM:PFM:NREP 1 HM:PFM:REP 2->506|PF02463|6.1e-17|29.1|196/220|SMC_N| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 2 RP:SCP:REP 11->222|1w44A|4e-20|19.7|178/304|c.37.1.11| RP:SCP:REP 431->506|1l7vC|3e-04|17.1|76/231|c.37.1.12| HM:SCP:REP 1->527|1w1wA_|1.5e-55|30.9|392/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 842 OP:NHOMOORG 834 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111-111111111111111111111111111111111111111111111111111111111111111111-111---11111111111--------------111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111122111111111111111111111111111111111-111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111------------1111111111111-----11111111111111111111111111111111111111211111111111111111111111111111111111111111-11111111111111111111111111111-111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111-11111111111111111111111111111111111111111111111111111111211111111111111--11111111-----1-1111-------------------------11111-1---111 -------------------------------------------------------------------------------------1------------1-----------------------------------------------------------1------------21-1----1111-----------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 219 STR:RPRED 38.8 SQ:SECSTR #EEEEEEEccTTccccEEEEcccEEEEEccTTTccTHHHHHHHHTTcccccTTcccccccEEEEEEEEEET#####################################################################################################################################################################################################################################################################################################################################ccccTTcccccTT#EEEcGGGcTTccccHHHHHHcHHHHHHHHHHHHHHHTTTccccEEEEEcccccccHHHHHHHHHHHHHHTTTcEEEEEcccTTGGGGccEEEEEETTEEEccT################TccEEEEEEEET###THHHHHHTTccHHHHHHcccc DISOP:02AL 175-186, 248-262, 423-429, 564-565| PSIPRED cccEEEEEEEEEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHccccccHHHHccccEEEEEEEEEccccHHHHHHHHHcccccccEEEEEEEEEEcccEEEEEccEEccHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEEEEcccccccHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHccEEEEEEccHHHHHccccEEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccc //