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Clostridium perfringens str. 13 (cper0)
Gene : rfbN
DDBJ      :rfbN         probable rhamnosyl transferase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  56/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.68.1
:304 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   2->255 3e25A PDBj 5e-16 15.2 %
:RPS:SCOP  2->269 1xhbA2  c.68.1.17 * 1e-12 16.6 %
:HMM:SCOP  1->217 1xhbA2 c.68.1.17 * 5.9e-26 23.3 %
:HMM:PFM   4->170 PF00535 * Glycos_transf_2 3.2e-15 20.9 163/169  
:BLT:SWISS 1->304 RFBN_SALTY 2e-39 35.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80321.1 GT:GENE rfbN GT:PRODUCT probable rhamnosyl transferase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 771521..772435 GB:FROM 771521 GB:TO 772435 GB:DIRECTION + GB:GENE rfbN GB:PRODUCT probable rhamnosyl transferase GB:NOTE 304 aa, similar to sp:RFBN_SALTY PUTATIVE RHAMNOSYLTRANSFERASE RFBN (EC 2.4.1.-) from Salmonella typhimurium (314 aa); 34.9% identity in 304 aa overlap CPE0615 GB:PROTEIN_ID BAB80321.1 LENGTH 304 SQ:AASEQ MKISIICPLYNAENYIMSLHNKILEQEKPEGTEVEVSYVLTRCKDKTEEMLKNMNLQYTLIEPKDFSHSKTREMMAFKSTGDIIVFISQDVMMKNNFWLKNLVQPIIDGECEASFSRQLCTNNTIEKYIREKNYPEESRVVSKKDINKYGLLTFFYSDASSAVKTSVYKELNGYDNKRLLINEDMYFAEKLIQAGYRIKYCSDSEVYHSHVFTLKSLYERYFDTGVFFRQNSQFLNYKGNKSGKDLAIHVLKRSLEDKNFKVTLNILPNFGARFIGSFLGKKYESLPRSFVMASSMSKKVYSQI GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 1->304|RFBN_SALTY|2e-39|35.6|298/314| RP:PDB:NREP 1 RP:PDB:REP 2->255|3e25A|5e-16|15.2|237/270| HM:PFM:NREP 1 HM:PFM:REP 4->170|PF00535|3.2e-15|20.9|163/169|Glycos_transf_2| RP:SCP:NREP 1 RP:SCP:REP 2->269|1xhbA2|1e-12|16.6|265/316|c.68.1.17| HM:SCP:REP 1->217|1xhbA2|5.9e-26|23.3|215/0|c.68.1.17|1/1|Nucleotide-diphospho-sugar transferases| OP:NHOMO 58 OP:NHOMOORG 58 OP:PATTERN ----------------------------------------------------1-1------------- ------------------------------------------------------------------------111---------1---------------------------------------1-----------------------1-11------11----1-----1--------------------------------------1-----------1------------------------------------------------------------1----------------------------------------------------1-1-----11-1-----1-----1--------1-------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11--1--------------1--------1-------------------1------------1--------------------1--1----1-11111-11-1111----------------------------------------11--------------------------1-11-1-11-----111------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 83.9 SQ:SECSTR ccEEEEEEEcccTTTHHHHHHTTGGGcTTTccEEEEccccHHHHHHHTTcEEEEHHHHcTTccccccHHHHHHHHHHHccccEEEEcccccccccTTHHHHHcHHHHHccccEEEEEcccHHHHTHHHHHHHHcGGGTTcccccGGGEEEEHHccTTcccEEEEHHHHHHcccccGHHHHGGHHHHHHHHHHHHHcTTcEEEEEccccccccHHHHHHHHHHHHHccccccccEEccccEEccccccccccHHHH################################################# PSIPRED cEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccEEEEEccccEEccHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHcccccEEEccccHHHHccccEEEEcccHHHHHHHHHHHcccccHHHEEEHHHHHHHHHHHHccccEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccc //