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Clostridium perfringens str. 13 (cper0)
Gene : rho
DDBJ      :rho          transcription terminator Rho factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  782/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.35.1b.40.4c.37.1
:479 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   111->472 1pvoB PDBj e-108 56.9 %
:RPS:PDB   107->470 2ck3F PDBj 6e-66 19.6 %
:RPS:SCOP  109->182 1a62A2  b.40.4.5 * 2e-14 61.6 %
:RPS:SCOP  158->421 1bmfD3  c.37.1.11 * 2e-52 22.0 %
:RPS:SCOP  396->455 1x2lA1  a.35.1.7 * 9e-09 13.3 %
:HMM:SCOP  1->47 1a62A1 a.140.3.1 * 5e-06 36.2 %
:HMM:SCOP  106->182 1a62A2 b.40.4.5 * 7.7e-26 67.1 %
:HMM:SCOP  146->427 1e79A3 c.37.1.11 * 1.2e-69 36.2 %
:RPS:PFM   111->183 PF07497 * Rho_RNA_bind 2e-24 70.8 %
:RPS:PFM   215->414 PF00006 * ATP-synt_ab 1e-08 28.7 %
:HMM:PFM   215->419 PF00006 * ATP-synt_ab 2.9e-41 25.0 200/215  
:HMM:PFM   109->183 PF07497 * Rho_RNA_bind 2.2e-31 67.6 74/78  
:HMM:PFM   6->40 PF07498 * Rho_N 7.9e-12 45.7 35/43  
:BLT:SWISS 110->472 RHO_BACSU e-128 62.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81913.1 GT:GENE rho GT:PRODUCT transcription terminator Rho factor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2526259..2527698) GB:FROM 2526259 GB:TO 2527698 GB:DIRECTION - GB:GENE rho GB:PRODUCT transcription terminator Rho factor GB:NOTE 479 aa, similar to gpu:AF072894_3 transcription terminator Rho factor from Listeria monocytogenes (423 aa); 63.1% identity in 363 aa overlap CPE2207 GB:PROTEIN_ID BAB81913.1 LENGTH 479 SQ:AASEQ MNIEQYENMTLVQLKEQAKELGIKNISKKKKSELIEELKAEFNKQNSNTKVIHKDGVILREKISQKEQGGNKESFSGERVVRNSNNYNNSNDEGKKEQLKDMISSSDSAKGILEILDNNNFGFLRCRNYLTSEDDIYVSPSQIRRFGLRTGDEVQGKVRIPKDGEKFKALLYVERVNGESPEKAVGRKKFEELTPIYPKERLRLETENGRDLSSRLMDIICPIGKGQRGMIVAPPKAGKTTLLKRIAQNISKNNPEVKLIVLLIDERPEEVTDMKRSIDGEVIYSTFDEEPQNHAKVSSIVLERAKRMVEQGRDVVILMDSLTRLSRAYNLTVTPSGRTLSGGLDPGALIMPKKFFGAARNLEEGGSLTILATSLVDTGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAIDIYKSGTRKEDLLFNEEEREASYKIRRVLQKENNIEDVAEKLINLLSKTKNNKEFLQVVLKSNLEN GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 110->472|RHO_BACSU|e-128|62.7|359/427| SEG 19->39|kelgikniskkkkselieelk| SEG 83->91|nsnnynnsn| BL:PDB:NREP 1 BL:PDB:REP 111->472|1pvoB|e-108|56.9|353/358| RP:PDB:NREP 1 RP:PDB:REP 107->470|2ck3F|6e-66|19.6|358/466| RP:PFM:NREP 2 RP:PFM:REP 111->183|PF07497|2e-24|70.8|72/75|Rho_RNA_bind| RP:PFM:REP 215->414|PF00006|1e-08|28.7|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 215->419|PF00006|2.9e-41|25.0|200/215|ATP-synt_ab| HM:PFM:REP 109->183|PF07497|2.2e-31|67.6|74/78|Rho_RNA_bind| HM:PFM:REP 6->40|PF07498|7.9e-12|45.7|35/43|Rho_N| GO:PFM:NREP 4 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 3 RP:SCP:REP 109->182|1a62A2|2e-14|61.6|73/78|b.40.4.5| RP:SCP:REP 158->421|1bmfD3|2e-52|22.0|259/276|c.37.1.11| RP:SCP:REP 396->455|1x2lA1|9e-09|13.3|60/87|a.35.1.7| HM:SCP:REP 1->47|1a62A1|5e-06|36.2|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 106->182|1a62A2|7.7e-26|67.1|76/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 146->427|1e79A3|1.2e-69|36.2|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1451 OP:NHOMOORG 786 OP:PATTERN -------------------------------------------------------------------- 1222211111111111111-111111111111111111112111211121121211111111212112221111111111111223221111111111111111111131222222222222222111111111123331111-12-----------------1-------------------11111111222222222222222222222212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22222222222232322222222222111221111222222222222211323222221111224222222322322222222122-22222122332232223342222221222222232222211111111111212322222222211111111111111111111111122112221433354333313332444514233322211223222111213312223211321111111112122223122322223333222222232333331212222122222222222222222221112311222221213121323111211322211-1222111111132133242442222222-43223322224241221121113343344444444444444442122322352455555445454112111111222211524111111111111111111-1111112133232222322222343111112111122232222245222222222222211-111222211112222222222---------------------1----2122222222132 --------------------------------------------------------1-----------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-3, 31-32, 42-44, 47-96, 476-479| PSIPRED ccHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEEEcccccccccEEEcccEEEEEEcccccEEEEEEEEcccccEEccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccccHHHHHHHHEEEEEEEEHHHHHccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccc //