[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : risA
DDBJ      :risA         riboflavin synthase alpha subunit
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  782/915 : Eukaryota  116/199 : Viruses  0/175   --->[See Alignment]
b.43.4
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->193 1kzlA PDBj 4e-40 45.3 %
:RPS:PDB   1->181 3ddyA PDBj 2e-41 22.8 %
:RPS:SCOP  1->90 1i8dA1  b.43.4.3 * 3e-25 32.2 %
:RPS:SCOP  95->201 1i8dA2  b.43.4.3 * 1e-37 42.1 %
:HMM:SCOP  1->91 1kzlA1 b.43.4.3 * 4.3e-24 38.5 %
:HMM:SCOP  93->204 1i8dA2 b.43.4.3 * 3.8e-32 42.0 %
:RPS:PFM   24->85 PF00677 * Lum_binding 2e-13 51.6 %
:RPS:PFM   99->183 PF00677 * Lum_binding 3e-15 40.5 %
:HMM:PFM   3->86 PF00677 * Lum_binding 2.2e-23 42.9 84/85  
:HMM:PFM   99->183 PF00677 * Lum_binding 3.3e-28 39.3 84/85  
:BLT:SWISS 1->216 RISA_ACTPL 8e-54 48.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80273.1 GT:GENE risA GT:PRODUCT riboflavin synthase alpha subunit GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 705691..706344 GB:FROM 705691 GB:TO 706344 GB:DIRECTION + GB:GENE risA GB:PRODUCT riboflavin synthase alpha subunit GB:NOTE 217 aa, similar to sp:RISA_ACTPL RIBOFLAVIN SYNTHASE ALPHA CHAIN (EC 2.5.1.9) from Actinobacillus pleuropneumoniae (215 aa); 48.1% identity in 216 aa overlap CPE0567 GB:PROTEIN_ID BAB80273.1 LENGTH 217 SQ:AASEQ MFTGIVEEIGEVISIDKNEKSSLLKIRANKVLEDTKIGDSISTNGVCLTITTKGKDYFTAYVMGETLRKSNIGNLKKSSKVNLERAMSINSRFNGHIVTGHIDSTGEIISFKDEGEAIWVEIKVSYELSKYIVYKGSIAIDGISLTIAEVKGESFKVSVIPHSQEETTLTKRKIGDLVNIECDPIGKYVEKLLGFNKDNRKKKSVLTEEFLTINGFI GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 1->216|RISA_ACTPL|8e-54|48.4|215/215| SEG 4->13|giveeigevi| BL:PDB:NREP 1 BL:PDB:REP 24->193|1kzlA|4e-40|45.3|170/202| RP:PDB:NREP 1 RP:PDB:REP 1->181|3ddyA|2e-41|22.8|171/175| RP:PFM:NREP 2 RP:PFM:REP 24->85|PF00677|2e-13|51.6|62/84|Lum_binding| RP:PFM:REP 99->183|PF00677|3e-15|40.5|84/84|Lum_binding| HM:PFM:NREP 2 HM:PFM:REP 3->86|PF00677|2.2e-23|42.9|84/85|Lum_binding| HM:PFM:REP 99->183|PF00677|3.3e-28|39.3|84/85|Lum_binding| RP:SCP:NREP 2 RP:SCP:REP 1->90|1i8dA1|3e-25|32.2|90/93|b.43.4.3| RP:SCP:REP 95->201|1i8dA2|1e-37|42.1|107/113|b.43.4.3| HM:SCP:REP 1->91|1kzlA1|4.3e-24|38.5|91/92|b.43.4.3|1/2|Riboflavin synthase domain-like| HM:SCP:REP 93->204|1i8dA2|3.8e-32|42.0|112/113|b.43.4.3|2/2|Riboflavin synthase domain-like| OP:NHOMO 973 OP:NHOMOORG 913 OP:PATTERN ------------------------11111111-------------1---------1-111------11 1111111111111111111-111111111111111111111111111111111111111111111111111----1-----11111111111-111---1111111111111111111111111111111111111111-111111112111111111111111111111111111111111111111---1111111111111111111111111111111111------1111111111111111111111--1----1---1-11----111-111111-------11111111111-----------------------11-11111111111111111111-111--1111111111211111-1-11111-11111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111---------------111111111111111222222111111111111111211111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111112221111112222222222222222222221-1111111-11111111111111111111-1111111111111111111111112211111111111111111111111111111111111111111111111111112121111111111111111111111111111111111111122221111111111111122221111122222111111111111111111111111------------------------------------11-111-111111 ------1-----111111111111111111111111-11111111111111111-111-11111111111121111111111111111-12111111111111111-11------------------------------------------------------------------111141111111-31111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 193 STR:RPRED 88.9 SQ:SECSTR cccccccEEEEEEEEEEccccEEEEEEccTTGGGccTTcEEEETTEEEEEEEEETTEEEEEEcHTTTTTccGGGccTTcEEEEEcccccccccccccccccccEEEEEEEEEccccEEEEEEEccTTTcccccTTcEEEETTEEEEccEEETTEEEEEEEGGGGGTccGGGccTTcEEEEEEcTHHHHHHHHH######################## DISOP:02AL 194-209| PSIPRED ccEEEEEEEEEEEEEEEccccEEEEEEccccccccccccEEEEccEEEEEEEEcccEEEEEEEHHHHccccccccccccEEEcccccccccccccEEEEEEEEEEEEEEEEEEcccEEEEEEEEcHHHHHHccccccEEEccEEEEEEEEcccEEEEEEcccHHHHHHHHHcccccEEEEEEEEHHHHHHHHHccccccccccccccHHHHHHcccc //