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Clostridium perfringens str. 13 (cper0)
Gene : rpsC
DDBJ      :rpsC         30S ribosomal protein S3
Swiss-Prot:RS3_CLOPS    RecName: Full=30S ribosomal protein S3;

Homologs  Archaea  60/68 : Bacteria  910/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
d.52.3d.53.1
:222 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->208 1vs5C PDBj 1e-59 51.0 %
:RPS:PDB   1->207 3bbnC PDBj 3e-59 38.2 %
:RPS:SCOP  2->107 1fjgC1  d.52.3.1 * 1e-28 41.9 %
:RPS:SCOP  108->208 1fjgC2  d.53.1.1 * 2e-37 52.5 %
:HMM:SCOP  2->107 1fjgC1 d.52.3.1 * 6.1e-39 57.1 %
:HMM:SCOP  108->208 1fjgC2 d.53.1.1 * 1.8e-37 63.4 %
:RPS:PFM   1->59 PF00417 * Ribosomal_S3_N 4e-06 44.1 %
:RPS:PFM   64->117 PF07650 * KH_2 1e-04 44.7 %
:RPS:PFM   120->203 PF00189 * Ribosomal_S3_C 8e-26 69.0 %
:HMM:PFM   120->203 PF00189 * Ribosomal_S3_C 2.4e-34 60.7 84/85  
:HMM:PFM   1->61 PF00417 * Ribosomal_S3_N 4.4e-25 49.2 61/66  
:HMM:PFM   63->118 PF07650 * KH_2 1.2e-16 49.0 49/59  
:BLT:SWISS 1->222 RS3_CLOPS e-115 100.0 %
:PROS 164->198|PS00548|RIBOSOMAL_S3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82105.1 GT:GENE rpsC GT:PRODUCT 30S ribosomal protein S3 GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2748378..2749046) GB:FROM 2748378 GB:TO 2749046 GB:DIRECTION - GB:GENE rpsC GB:PRODUCT 30S ribosomal protein S3 GB:NOTE 222 aa, similar to prf:2401234H ribosomal protein S3 from Bacillus subtilis (218 aa); 60.7% identity in 211 aa overlap CPE2399 GB:PROTEIN_ID BAB82105.1 LENGTH 222 SQ:AASEQ MGQKVHPHGLRVGVIKDWDAKWYADKKNFADNLIEDQQIRKFIKKELFSAGIAKIEIERSAKRVKLNIHTAKPGVIIGKGGSGIERLKASLKNIIAEKNVLINIVEVKNAETNAQLMAENIAAQLEKRISFRRAMKQTIQRAMKAGTLGVKTACSGRLGGAEIARTEQYNEGTIPLQTIRADIDYGFAEADTTYGKIGVKVWVYNGEVLPTKKVEKKEEANA GT:EXON 1|1-222:0| SW:ID RS3_CLOPS SW:DE RecName: Full=30S ribosomal protein S3; SW:GN Name=rpsC; OrderedLocusNames=CPR_2393; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->222|RS3_CLOPS|e-115|100.0|222/222| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 164->198|PS00548|RIBOSOMAL_S3|PDOC00474| SEG 16->27|kdwdakwyadkk| BL:PDB:NREP 1 BL:PDB:REP 2->208|1vs5C|1e-59|51.0|206/206| RP:PDB:NREP 1 RP:PDB:REP 1->207|3bbnC|3e-59|38.2|207/217| RP:PFM:NREP 3 RP:PFM:REP 1->59|PF00417|4e-06|44.1|59/68|Ribosomal_S3_N| RP:PFM:REP 64->117|PF07650|1e-04|44.7|47/49|KH_2| RP:PFM:REP 120->203|PF00189|8e-26|69.0|84/84|Ribosomal_S3_C| HM:PFM:NREP 3 HM:PFM:REP 120->203|PF00189|2.4e-34|60.7|84/85|Ribosomal_S3_C| HM:PFM:REP 1->61|PF00417|4.4e-25|49.2|61/66|Ribosomal_S3_N| HM:PFM:REP 63->118|PF07650|1.2e-16|49.0|49/59|KH_2| GO:PFM:NREP 9 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00417|IPR008282| GO:PFM GO:0005622|"GO:intracellular"|PF00417|IPR008282| GO:PFM GO:0005840|"GO:ribosome"|PF00417|IPR008282| GO:PFM GO:0006412|"GO:translation"|PF00417|IPR008282| GO:PFM GO:0003723|"GO:RNA binding"|PF07650|IPR004044| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00189|IPR001351| GO:PFM GO:0005622|"GO:intracellular"|PF00189|IPR001351| GO:PFM GO:0005840|"GO:ribosome"|PF00189|IPR001351| GO:PFM GO:0006412|"GO:translation"|PF00189|IPR001351| RP:SCP:NREP 2 RP:SCP:REP 2->107|1fjgC1|1e-28|41.9|105/105|d.52.3.1| RP:SCP:REP 108->208|1fjgC2|2e-37|52.5|101/101|d.53.1.1| HM:SCP:REP 2->107|1fjgC1|6.1e-39|57.1|105/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 108->208|1fjgC2|1.8e-37|63.4|101/101|d.53.1.1|1/1|Ribosomal protein S3 C-terminal domain| OP:NHOMO 986 OP:NHOMOORG 979 OP:PATTERN 1111-111111111111------111111111111111111111111111111111111111111-11 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 -----------1--------------------------------------------------------------1----------1----------------------------------------------------------------------------------------11----------123--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 208 STR:RPRED 93.7 SQ:SECSTR ccccccTTTccTTTTccccccccccTTccHHHHHHHHHHHcccccTTTTTcEEEEEccccccccccEEEEccTTTTccccccTTHHHHHHHHHHcccccccccEEEcccTTTcHHHHHHHcTTTTTTTccHHHHHTHHHHHHHTTcccEEEEEcccccTTcccccccEEEEEcccccccTTcccccEEEccccccccEEEEEEEcccc############## DISOP:02AL 210-222| PSIPRED cccEEcccEEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEEcccEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHEEEEEEEEccEEccccccccEEEEEEEEEcccEEEEEEEEEcccccccccccccccccc //