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Clostridium perfringens str. 13 (cper0)
Gene : rpsQ
DDBJ      :rpsQ         30S ribosomal protein S17
Swiss-Prot:RS17_CLOPE   RecName: Full=30S ribosomal protein S17;

Homologs  Archaea  0/68 : Bacteria  884/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:84 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->83 1ripA PDBj 4e-27 71.8 %
:RPS:PDB   6->84 3d5aQ PDBj 7e-24 48.1 %
:RPS:SCOP  7->83 1vs5Q1  b.40.4.5 * 2e-26 62.3 %
:HMM:SCOP  5->83 1fjgQ_ b.40.4.5 * 4e-30 62.0 %
:RPS:PFM   11->79 PF00366 * Ribosomal_S17 2e-16 69.6 %
:HMM:PFM   11->78 PF00366 * Ribosomal_S17 5.3e-32 60.3 68/69  
:BLT:SWISS 1->84 RS17_CLOPE 1e-44 100.0 %
:PROS 57->69|PS00056|RIBOSOMAL_S17

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82102.1 GT:GENE rpsQ GT:PRODUCT 30S ribosomal protein S17 GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2747428..2747682) GB:FROM 2747428 GB:TO 2747682 GB:DIRECTION - GB:GENE rpsQ GB:PRODUCT 30S ribosomal protein S17 GB:NOTE 84 aa, similar to gp:SCD31_36 30S ribosomal protein S17 from Streptomyces coelicolor A3(2) (95 aa); 69.5% identity in 82 aa overlap CPE2396 GB:PROTEIN_ID BAB82102.1 LENGTH 84 SQ:AASEQ MERNLRKKRLGRVVSDKMDKTIVVAVETKVRHPLYGKTVNRTTKFKAHDENNEARFGDRVLIMETRPLSKDKRWRLVEIVEKAK GT:EXON 1|1-84:0| SW:ID RS17_CLOPE SW:DE RecName: Full=30S ribosomal protein S17; SW:GN Name=rpsQ; OrderedLocusNames=CPE2396; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->84|RS17_CLOPE|1e-44|100.0|84/84| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 57->69|PS00056|RIBOSOMAL_S17|PDOC00055| BL:PDB:NREP 1 BL:PDB:REP 6->83|1ripA|4e-27|71.8|78/81| RP:PDB:NREP 1 RP:PDB:REP 6->84|3d5aQ|7e-24|48.1|79/99| RP:PFM:NREP 1 RP:PFM:REP 11->79|PF00366|2e-16|69.6|69/69|Ribosomal_S17| HM:PFM:NREP 1 HM:PFM:REP 11->78|PF00366|5.3e-32|60.3|68/69|Ribosomal_S17| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00366|IPR000266| GO:PFM GO:0005622|"GO:intracellular"|PF00366|IPR000266| GO:PFM GO:0005840|"GO:ribosome"|PF00366|IPR000266| GO:PFM GO:0006412|"GO:translation"|PF00366|IPR000266| RP:SCP:NREP 1 RP:SCP:REP 7->83|1vs5Q1|2e-26|62.3|77/80|b.40.4.5| HM:SCP:REP 5->83|1fjgQ_|4e-30|62.0|79/104|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 935 OP:NHOMOORG 908 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111121111111111111111111111111111-11111111111112-1111111111-11111111111111111111111111111---11-----111111111111111-1--11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111-1-------11111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111-1111111111111111111111111111111111-1111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 -----------------------------------------------------------------------------------------1---------1-----1---------------------------------------------------------------------11-1G122222112-21111111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 79 STR:RPRED 94.0 SQ:SECSTR #####ccEEEEEEEEcccccEEEEEEEEEEEcTTTccEEEEEEEEEEEcTTccccTTcEEEEEEEEEEETTEEEEEEEEEEccc DISOP:02AL 1-4| PSIPRED cccccEEEEEEEEEEcccccEEEEEEEEEEEccEEEEEEEEEccEEEEcccccEEcccEEEEEEcccccccEEEEEEEEEEEcc //