[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : rrf
DDBJ      :rrf          ribosome recycling factor
Swiss-Prot:RRF_CLOPS    RecName: Full=Ribosome-recycling factor;         Short=RRF;AltName: Full=Ribosome-releasing factor;

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  105/199 : Viruses  0/175   --->[See Alignment]
d.67.3
:185 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->185 1is1A PDBj 8e-50 48.6 %
:RPS:PDB   1->183 1ek8A PDBj 1e-60 45.4 %
:RPS:SCOP  2->183 1dd5A  d.67.3.1 * 4e-59 45.6 %
:HMM:SCOP  1->185 1is1A_ d.67.3.1 * 6.9e-68 57.8 %
:RPS:PFM   19->183 PF01765 * RRF 2e-43 58.2 %
:HMM:PFM   20->183 PF01765 * RRF 2.3e-71 59.1 164/165  
:BLT:SWISS 1->185 RRF_CLOPS e-102 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81403.1 GT:GENE rrf GT:PRODUCT ribosome recycling factor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1976070..1976627) GB:FROM 1976070 GB:TO 1976627 GB:DIRECTION - GB:GENE rrf GB:PRODUCT ribosome recycling factor GB:NOTE 185 aa, similar to sp:RRF_CLOPE RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (FRAGMENT) from Clostridium perfringens (132 aa); 100% identity in 132 aa overlap CPE1697 GB:PROTEIN_ID BAB81403.1 LENGTH 185 SQ:AASEQ MIKDVIKKSEEKMNKTINSLNSELATMKAGRANPTMLDRIQVEYYGSMCPLNQVANVSSPEPRLLVITPWEKPMLKEIEKAILKSDLGINPNNDGTIIRLLVPELTEETRKNLVKNVKKVGEQAKVAIRSIRKDANDKVKNFKKEGTITEDEMKKGEDDIQKVTDKFVKEIDTIVAAKEKEIMSI GT:EXON 1|1-185:0| SW:ID RRF_CLOPS SW:DE RecName: Full=Ribosome-recycling factor; Short=RRF;AltName: Full=Ribosome-releasing factor; SW:GN Name=frr; OrderedLocusNames=CPR_1669; SW:KW Complete proteome; Cytoplasm; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->185|RRF_CLOPS|e-102|100.0|185/185| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 1->185|1is1A|8e-50|48.6|185/185| RP:PDB:NREP 1 RP:PDB:REP 1->183|1ek8A|1e-60|45.4|183/185| RP:PFM:NREP 1 RP:PFM:REP 19->183|PF01765|2e-43|58.2|165/165|RRF| HM:PFM:NREP 1 HM:PFM:REP 20->183|PF01765|2.3e-71|59.1|164/165|RRF| GO:PFM:NREP 1 GO:PFM GO:0006412|"GO:translation"|PF01765|IPR002661| RP:SCP:NREP 1 RP:SCP:REP 2->183|1dd5A|4e-59|45.6|182/184|d.67.3.1| HM:SCP:REP 1->185|1is1A_|6.9e-68|57.8|185/185|d.67.3.1|1/1|Ribosome recycling factor, RRF| OP:NHOMO 1053 OP:NHOMOORG 1012 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 1---111-----1111--------------------1-----------111---------------11--11-1-1111-1-----11--1---1-111-111111-141211--111-1-11111-1-541-121-1111-111-1---1--1111-11--11111111---1122229222212222-214222111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 100.0 SQ:SECSTR cHHHHHHHHHHHHHHHHHHHHHHHHTcccccccTTTTTTcEEEETTEEEEGGGTEEEEEEETTEEEEEEccGGGHHHHHHHHHHTccccccEEETTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcc DISOP:02AL 185-186| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccEEEEEcccEEEHHHEEEEEcccccEEEEEEccHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //