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Clostridium perfringens str. 13 (cper0)
Gene : sigH
DDBJ      :sigH         RNA polymerase sigma-H factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  97/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13a.4.6
:215 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->122 1l9zH PDBj 3e-05 26.0 %
:RPS:PDB   21->212 3dxjF PDBj 9e-15 15.8 %
:RPS:SCOP  9->103 1sigA  a.177.1.1 * 3e-17 26.3 %
:RPS:SCOP  123->212 1iw7F2  a.4.13.2 * 3e-06 15.9 %
:HMM:SCOP  10->109 1iw7F3 a.177.1.1 * 2e-21 35.0 %
:HMM:SCOP  144->209 1p4wA_ a.4.6.2 * 1e-07 28.8 %
:RPS:PFM   58->90 PF04542 * Sigma70_r2 2e-06 48.5 %
:HMM:PFM   40->108 PF04542 * Sigma70_r2 1.3e-13 24.6 69/71  
:HMM:PFM   164->209 PF00196 * GerE 4.5e-09 37.0 46/58  
:BLT:SWISS 14->215 RPSH_BACLI 5e-68 60.9 %
:PROS 180->207|PS00622|HTH_LUXR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82128.1 GT:GENE sigH GT:PRODUCT RNA polymerase sigma-H factor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2770748..2771395) GB:FROM 2770748 GB:TO 2771395 GB:DIRECTION - GB:GENE sigH GB:PRODUCT RNA polymerase sigma-H factor GB:NOTE 215 aa, similar to gpu:AP001507_115 RNA polymerase sigma-H factor (sigma-30) from Bacillus halodurans (217 aa); 59.6% identity in 213 aa overlap CPE2422 GB:PROTEIN_ID BAB82128.1 LENGTH 215 SQ:AASEQ MGITYDLAKINNYEEFKDLTDKEVVMLAKNGDNMAQEYVISKYEQFVKAKSKSYFLIGADKEDIYQEGMIGLYKAIRDFNPDKFASFKSFAELCVTRQIITAIKTATRQKHIPLNTYISLSKPIYEEESDRTLLDTVVGITITDPESLVIGKEEVEKIESAINSVLSELELEVLNSYLDGKSYQEIACDLDREAKSIDNALQRVKRKLEKCLNIK GT:EXON 1|1-215:0| BL:SWS:NREP 1 BL:SWS:REP 14->215|RPSH_BACLI|5e-68|60.9|202/223| PROS 180->207|PS00622|HTH_LUXR_1|PDOC00542| SEG 163->176|nsvlselelevlns| BL:PDB:NREP 1 BL:PDB:REP 22->122|1l9zH|3e-05|26.0|100/319| RP:PDB:NREP 1 RP:PDB:REP 21->212|3dxjF|9e-15|15.8|177/349| RP:PFM:NREP 1 RP:PFM:REP 58->90|PF04542|2e-06|48.5|33/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 40->108|PF04542|1.3e-13|24.6|69/71|Sigma70_r2| HM:PFM:REP 164->209|PF00196|4.5e-09|37.0|46/58|GerE| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 9->103|1sigA|3e-17|26.3|95/305|a.177.1.1| RP:SCP:REP 123->212|1iw7F2|3e-06|15.9|88/100|a.4.13.2| HM:SCP:REP 10->109|1iw7F3|2e-21|35.0|100/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 144->209|1p4wA_|1e-07|28.8|66/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 103 OP:NHOMOORG 97 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------411111111111111111111111111111111111111111------------------------------------------------------------------------------------------11111111111111111111111111--1111122111121111111-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-111111-1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 196 STR:RPRED 91.2 SQ:SECSTR ################HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHH### DISOP:02AL 215-216| PSIPRED ccccHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccc //