[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : sigL
DDBJ      :sigL         RNA polymerase sigma factor sigma54
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  543/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.30.1
:461 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   405->459 2o8kA PDBj 1e-13 56.4 %
:RPS:PDB   314->367 2ao9H PDBj 7e-05 13.5 %
:RPS:PDB   377->451 2ahqA PDBj 1e-12 46.3 %
:RPS:SCOP  313->381 2h6bA1  a.4.5.4 * 8e-04 22.2 %
:RPS:SCOP  416->461 1m0tA1  c.30.1.4 * 5e-12 19.6 %
:RPS:PFM   7->52 PF00309 * Sigma54_AID 4e-05 43.5 %
:RPS:PFM   103->284 PF04963 * Sigma54_CBD 2e-26 39.2 %
:RPS:PFM   298->459 PF04552 * Sigma54_DBD 3e-36 56.3 %
:HMM:PFM   298->460 PF04552 * Sigma54_DBD 6.1e-59 52.8 159/160  
:HMM:PFM   97->283 PF04963 * Sigma54_CBD 3.9e-44 30.6 186/195  
:HMM:PFM   5->50 PF00309 * Sigma54_AID 1.7e-20 54.3 46/49  
:BLT:SWISS 3->461 RP54_CLOK5 e-139 54.3 %
:PROS 345->364|PS00717|SIGMA54_1
:PROS 440->447|PS00718|SIGMA54_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81012.1 GT:GENE sigL GT:PRODUCT RNA polymerase sigma factor sigma54 GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1546057..1547442) GB:FROM 1546057 GB:TO 1547442 GB:DIRECTION - GB:GENE sigL GB:PRODUCT RNA polymerase sigma factor sigma54 GB:NOTE 461 aa, similar to gpu:AP001519_78 RNA polymerase sigma factor (sigma54) from Bacillus halodurans (445 aa); 38.1% identity in 459 aa overlap CPE1306 GB:PROTEIN_ID BAB81012.1 LENGTH 461 SQ:AASEQ MLMDFNLNLTQEQKLIMTQQMQLSIKLLQMSTYDLREYIEKEFSENPVLEAQYEDTKEVSKEQDRLEYKELVKYLESDNYGSQSYGEYDQEGISPFTFISKPESLTDYLEGQILELPIDEYMRSVCSYMVECLDQKGYLDIKKEELMGELDCSEETFNRALIVLHNLEPAGIGARDLKECLEIQLERKGENDPIVKEIIDNHLDDLADNKYQVIAKDLGITPKKAQDYGDLIKTLEPKPSRGFYTGDEVGFIIPDAEIRKIDGEFLILMNDGVLPMLSVNPLYKDILKDSTNDKEATEYVKEKIEKAMFLIKSIEQRKSTLYKVLEKILEKQKDYFEKGEKYLKPMTLKEIAEQLEMHESTISRAIRDKYILTSMGTIKIKNLFVNSISNKEKSDGEEDVTVINIKKALEEVIKEENKAKPLSDQTISEILKEKGMVISRRTVAKYREELGIKSSSKRKRF GT:EXON 1|1-461:0| BL:SWS:NREP 1 BL:SWS:REP 3->461|RP54_CLOK5|e-139|54.3|453/453| PROS 345->364|PS00717|SIGMA54_1|PDOC00593| PROS 440->447|PS00718|SIGMA54_2|PDOC00593| BL:PDB:NREP 1 BL:PDB:REP 405->459|2o8kA|1e-13|56.4|55/63| RP:PDB:NREP 2 RP:PDB:REP 314->367|2ao9H|7e-05|13.5|52/114| RP:PDB:REP 377->451|2ahqA|1e-12|46.3|67/67| RP:PFM:NREP 3 RP:PFM:REP 7->52|PF00309|4e-05|43.5|46/49|Sigma54_AID| RP:PFM:REP 103->284|PF04963|2e-26|39.2|181/195|Sigma54_CBD| RP:PFM:REP 298->459|PF04552|3e-36|56.3|158/159|Sigma54_DBD| HM:PFM:NREP 3 HM:PFM:REP 298->460|PF04552|6.1e-59|52.8|159/160|Sigma54_DBD| HM:PFM:REP 97->283|PF04963|3.9e-44|30.6|186/195|Sigma54_CBD| HM:PFM:REP 5->50|PF00309|1.7e-20|54.3|46/49|Sigma54_AID| GO:PFM:NREP 8 GO:PFM GO:0003677|"GO:DNA binding"|PF00309|IPR000394| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00309|IPR000394| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00309|IPR000394| GO:PFM GO:0006352|"GO:transcription initiation"|PF00309|IPR000394| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00309|IPR000394| GO:PFM GO:0016987|"GO:sigma factor activity"|PF00309|IPR000394| GO:PFM GO:0003677|"GO:DNA binding"|PF04963|IPR007046| GO:PFM GO:0006352|"GO:transcription initiation"|PF04963|IPR007046| RP:SCP:NREP 2 RP:SCP:REP 313->381|2h6bA1|8e-04|22.2|63/82|a.4.5.4| RP:SCP:REP 416->461|1m0tA1|5e-12|19.6|46/110|c.30.1.4| OP:NHOMO 604 OP:NHOMOORG 544 OP:PATTERN -------------------------------------------------------------------- 111-----------------------------------------------------------------------------1--111-1111111111--1111111111111111111111111111111111111--------1----------------------------------------------11111111111111111111111111111111111111111---------------------1----1-----11------1---------------------------------------------------11111111111111-1111111-1---1--1-1111111111-11----1111111-----112111111111111111111111-11111211221-111122111211111111-14344--1--------12211111------------------------------11111122122221222111122222222112221111--22211211211111111211111-1111-111122111111111111111111111111111111111-111-111111111111111121--11111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---1-----111111111---------------11111111111111111111111111111---------11111111111111122222222231111--1111111111111-1-11--------------------------11--------111 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 153 STR:RPRED 33.2 SQ:SECSTR ###################################################################################################################################################################################################################################################################################################################EEETHHHHHHHTTccHHHHHHHHHHHHHHHEccccccccccGGGTTTTTccHHHHHHHHHHHHHcTTccccccccccGGcGGGTTcccccccccHHHHHHHHHHHGGGccccccccHHHHHHHHTTTcccccHHHHHHHHHHTcccccGGGGG# DISOP:02AL 1-5, 7-10, 53-71, 81-89, 286-299, 392-398, 455-461| PSIPRED cccccccHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEccEEEEEEccccccEEEEcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccEEEEccccEEEcccccEEHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEHHHHHHHHHcccccHHHcccc //