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Clostridium perfringens str. 13 (cper0)
Gene : speB
DDBJ      :speB         probable agmatinase
Swiss-Prot:             

Homologs  Archaea  63/68 : Bacteria  399/915 : Eukaryota  144/199 : Viruses  0/175   --->[See Alignment]
c.42.1
:285 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->279 1gq6B PDBj 2e-28 30.6 %
:RPS:PDB   21->279 2ef4A PDBj 7e-57 23.9 %
:RPS:SCOP  19->279 1wogA  c.42.1.1 * 2e-68 29.5 %
:HMM:SCOP  3->286 2a0mA1 c.42.1.1 * 4.6e-78 37.5 %
:RPS:PFM   20->277 PF00491 * Arginase 1e-36 39.7 %
:HMM:PFM   21->279 PF00491 * Arginase 1.4e-75 39.1 253/274  
:BLT:SWISS 10->280 SPEB_BACSU 9e-72 48.0 %
:PROS 210->231|PS01053|ARGINASE_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80257.1 GT:GENE speB GT:PRODUCT probable agmatinase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 680183..681040 GB:FROM 680183 GB:TO 681040 GB:DIRECTION + GB:GENE speB GB:PRODUCT probable agmatinase GB:NOTE 285 aa, similar to pir:H70057 agmatinase homolog ywhG from Bacillus subtilis (290 aa); 48% identity in 271 aa overlap CPE0551 GB:PROTEIN_ID BAB80257.1 LENGTH 285 SQ:AASEQ MLMNRNVSTFIGCEAEYDESSIVVFGAPFDSTTSFRPGTRFASQVMRGESWGLESYSPYQDLDLYDFNIFDGGEIELPFGNSEGALALIEDFSTKVVEDGKIPAMIGGEHLVTLGAFKGVFKKYPDVHVIHFDAHADLREDYLGQKLSHATVIHRVWDLVGDNKIFQFGIRSGEKEEFLWAKDHVYTNKFNCDTLDYALERVKDKPVYVTIDLDVLDPSVFPGTGTPEPGGIQFNELLNSILKLRGLNIVGFDINELSPQYDQTGASTAVACKVLREMLLVANNK GT:EXON 1|1-285:0| BL:SWS:NREP 1 BL:SWS:REP 10->280|SPEB_BACSU|9e-72|48.0|271/290| PROS 210->231|PS01053|ARGINASE_1|PDOC00135| BL:PDB:NREP 1 BL:PDB:REP 22->279|1gq6B|2e-28|30.6|258/301| RP:PDB:NREP 1 RP:PDB:REP 21->279|2ef4A|7e-57|23.9|255/282| RP:PFM:NREP 1 RP:PFM:REP 20->277|PF00491|1e-36|39.7|247/266|Arginase| HM:PFM:NREP 1 HM:PFM:REP 21->279|PF00491|1.4e-75|39.1|253/274|Arginase| GO:PFM:NREP 2 GO:PFM GO:0016813|"GO:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"|PF00491|IPR006035| GO:PFM GO:0046872|"GO:metal ion binding"|PF00491|IPR006035| RP:SCP:NREP 1 RP:SCP:REP 19->279|1wogA|2e-68|29.5|258/303|c.42.1.1| HM:SCP:REP 3->286|2a0mA1|4.6e-78|37.5|280/0|c.42.1.1|1/1|Arginase/deacetylase| OP:NHOMO 985 OP:NHOMOORG 606 OP:PATTERN 2211112222222221121211112111111-111111111111111--1111-11112122112-11 -1-111-1-------------3---4------4666-112--111-------211111----2--121111-----------2----------1--1--11-1231---------------------------------11---132-2---222--21211222--1111111111111111111111112312222212222222222211122222121111------1-111111111111111----2---------------------------------------------------------------111----1111--------1-11111-111111--1---1111111-1111111--1---------------11--------33333333332-111111--13--411423444422111--1222122326--------1----1-------------------------------2---1-1221-2225221111-22322222-2422-1----1-1-1---111211-------11111111112----311-11-11--11--------1--111113111--------------------------------21-11-----1-1----1-11-11-------------21--1111111111111-1111111111111111111222--1212122222221222122211111111-------------11--11111------11---------------1------1-1---2222222122321----1----------11-1111111111----------------1-----------------1-------------------------------1------ --------42--11232322335453522-22222144333331-122222323112--222123123-11-512-----333334-4-3422141111-1-1223-1--2211132111-111111112B2-222112121121111111111133-2354-42--------21----7-----11223211------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 277 STR:RPRED 97.2 SQ:SECSTR #####ccccGGGGcccGGGcEEEEEEEcccccccHcccGGGHHHHHHHTTHHHHHHHHTcccEEEEEEEccccccccTTHHHHHHHHHHHHHHHHTccTTEEEEEEEccGGGHHHHHHHHTTTccccEEEEEccccccccTTTccccGGGcHHHHHTTcccGGGEEEEEEccccHHHHHHHHHHEEEHHHcHHHHHHHHHHTTTccEEEEEEGGGccTTTcccccccccccccHHHHHHHHHHHHHTcEEEEEEEcccTTTccTTHHHHHHHHHHHHHTHHH### DISOP:02AL 285-286| PSIPRED ccccccccHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHHHccccccHHccccHHHccEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHcccccEEEEEEccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHcccccccccccccHHHHHHHHHHHHcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHccc //