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Clostridium perfringens str. 13 (cper0)
Gene : speD
DDBJ      :speD         S-adenosylmethionine decarboxylase
Swiss-Prot:SPED_CLOPE   RecName: Full=S-adenosylmethionine decarboxylase proenzyme;         Short=AdoMetDC;         Short=SAMDC;         EC=4.1.1.50;Contains:  RecName: Full=S-adenosylmethionine decarboxylase beta chain;Contains:  RecName: Full=S-adenosylmethionine decarboxylase alpha chain;Flags: Precursor;

Homologs  Archaea  0/68 : Bacteria  138/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.156.1
:271 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   182->271 2ebcA PDBj 4e-04 30.3 %
:RPS:PDB   54->186 3c6kB PDBj 3e-07 16.7 %
:HMM:SCOP  48->183 1tluA_ d.156.1.2 * 6.3e-22 43.8 %
:RPS:PFM   44->178 PF02675 * AdoMet_dc 1e-26 64.2 %
:HMM:PFM   44->178 PF02675 * AdoMet_dc 3.5e-36 54.7 95/106  
:BLT:SWISS 1->271 SPED_CLOPE e-160 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80254.1 GT:GENE speD GT:PRODUCT S-adenosylmethionine decarboxylase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 677043..677858 GB:FROM 677043 GB:TO 677858 GB:DIRECTION + GB:GENE speD GB:PRODUCT S-adenosylmethionine decarboxylase GB:NOTE 271 aa, similar to pir:D83564 S-adenosylmethionine decarboxylase proenzyme PA0654 from Pseudomonas aeruginosa (strain PAO1) (264 aa); 57.3% identity in 267 aa overlap CPE0548 GB:PROTEIN_ID BAB80254.1 LENGTH 271 SQ:AASEQ MLGLKEKICLYGFNNLTKTLSFNIYDICYAKTEREKEDYIKYIDEQYNSERLTKILCDVTEMIGAHVLNISKQDYEPQGASVNVLITEEALPVALIDPSCNKGELSYLELRDSVVGHLDKSHLTVHTYPEFHPNNDIISFRVDIDVSTCGKISPLNALDYLIGSFDSDVITIDYRVRGFTRDVDGRKCYIDHDIKSIQDYIDGETLKKYDAMDVNVYQSNIFHTKMMLKDIVLNNYLFNSDPYELSPNDRREIRDRISKEMIEIYGGVNIY GT:EXON 1|1-271:0| SW:ID SPED_CLOPE SW:DE RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Short=SAMDC; EC=4.1.1.50;Contains: RecName: Full=S-adenosylmethionine decarboxylase beta chain;Contains: RecName: Full=S-adenosylmethionine decarboxylase alpha chain;Flags: Precursor; SW:GN Name=speD; OrderedLocusNames=CPE0548; SW:KW Autocatalytic cleavage; Complete proteome; Decarboxylase; Lyase;Polyamine biosynthesis; Pyruvate; S-adenosyl-L-methionine;Schiff base; Spermidine biosynthesis; Zymogen. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->271|SPED_CLOPE|e-160|100.0|271/271| GO:SWS:NREP 4 GO:SWS GO:0016831|"GO:carboxy-lyase activity"|Decarboxylase| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0006596|"GO:polyamine biosynthetic process"|Polyamine biosynthesis| GO:SWS GO:0008295|"GO:spermidine biosynthetic process"|Spermidine biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 182->271|2ebcA|4e-04|30.3|89/342| RP:PDB:NREP 1 RP:PDB:REP 54->186|3c6kB|3e-07|16.7|90/345| RP:PFM:NREP 1 RP:PFM:REP 44->178|PF02675|1e-26|64.2|95/106|AdoMet_dc| HM:PFM:NREP 1 HM:PFM:REP 44->178|PF02675|3.5e-36|54.7|95/106|AdoMet_dc| GO:PFM:NREP 2 GO:PFM GO:0004014|"GO:adenosylmethionine decarboxylase activity"|PF02675|IPR003826| GO:PFM GO:0008295|"GO:spermidine biosynthetic process"|PF02675|IPR003826| HM:SCP:REP 48->183|1tluA_|6.3e-22|43.8|96/117|d.156.1.2|1/1|S-adenosylmethionine decarboxylase| OP:NHOMO 139 OP:NHOMOORG 139 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------11----------11-------------------------------------------------------------------------------------------1111-------1-1-----111--------1-11--------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1--1-----------------------11111--1111111-111111111111-11111111111111111111111111-1111111111111111111111111-111111111111--1----------1111--------------------------1-1111--1-------111------------------------11111111111111----11----------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 174 STR:RPRED 64.2 SQ:SECSTR #####################################################EEEEEEEcccHHHHHHHHHHHHHHTTcEEEE################################EEcccccEEEEEEcTTc###########cEEEEEEETTEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccc#cccccccEEEEEEEGGGTTccccccccccHHHHHHHHHHHHHTcGGGcccEEEEEEEcHHHHHHHTTTccGGGccccccH DISOP:02AL 1-5| PSIPRED ccccccccEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEEEccccHHHccccccccccccccccHHHHHEEccccEEEEEcccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEccccEEEccccEEEEEccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHcccccc //