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Clostridium perfringens str. 13 (cper0)
Gene : spo0A.1
DDBJ      :spo0A        phosphorylation-activated transcription factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  81/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.6
:117 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->115 1fc3A PDBj 5e-47 74.6 %
:RPS:SCOP  2->115 1fc3A  a.4.6.3 * 6e-23 74.6 %
:HMM:SCOP  1->116 1fc3A_ a.4.6.3 * 2.3e-47 68.1 %
:RPS:PFM   7->110 PF08769 * Spo0A_C 2e-43 76.0 %
:HMM:PFM   6->111 PF08769 * Spo0A_C 1.4e-52 66.0 106/106  
:BLT:SWISS 1->117 SP0A_CLOB8 9e-60 89.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81518.1 GT:GENE spo0A.1 GT:PRODUCT phosphorylation-activated transcription factor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2090953..2091306) GB:FROM 2090953 GB:TO 2091306 GB:DIRECTION - GB:GENE spo0A GB:PRODUCT phosphorylation-activated transcription factor GB:NOTE 117 aa, similar to gp:CBE288947_2 Spo0A protein from Clostridium beijerinckii (273 aa); 89.7% identity in 117 aa overlap.Truncated by frame shift mutation. Truncated by frameshift mutation (confirmed by PCR-direct sequencing) CPE1812 GB:PROTEIN_ID BAB81518.1 LENGTH 117 SQ:AASEQ MDLEVEITSIIHEIGVPAHIKGYMYLREAITMVVNDMELLSAITKELYPSIAKKYNTTASRVERAIRHAIEVAWGRGQIDAINKIFGHTIHNDKGKPTNSEFIAMVADKLRLKNKVS GT:EXON 1|1-117:0| BL:SWS:NREP 1 BL:SWS:REP 1->117|SP0A_CLOB8|9e-60|89.7|117/273| BL:PDB:NREP 1 BL:PDB:REP 2->115|1fc3A|5e-47|74.6|114/119| RP:PFM:NREP 1 RP:PFM:REP 7->110|PF08769|2e-43|76.0|104/106|Spo0A_C| HM:PFM:NREP 1 HM:PFM:REP 6->111|PF08769|1.4e-52|66.0|106/106|Spo0A_C| GO:PFM:NREP 5 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08769|IPR014879| GO:PFM GO:0005509|"GO:calcium ion binding"|PF08769|IPR014879| GO:PFM GO:0005737|"GO:cytoplasm"|PF08769|IPR014879| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08769|IPR014879| GO:PFM GO:0042173|"GO:regulation of sporulation resulting in formation of a cellular spore"|PF08769|IPR014879| RP:SCP:NREP 1 RP:SCP:REP 2->115|1fc3A|6e-23|74.6|114/119|a.4.6.3| HM:SCP:REP 1->116|1fc3A_|2.3e-47|68.1|116/0|a.4.6.3|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 87 OP:NHOMOORG 81 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111111111111111111111111111------11------------------------------------------------------------------------------------------11111111111111121111111112--2111122121111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 114 STR:RPRED 97.4 SQ:SECSTR #HHHHHHHHHHHHHTccTTcHHHHHHHHHHHHHHHcGGGGGGTTTTHHHHHHHHHTccHHHHHHHHHHHHHHHHHcccTTTTHHHHcHHHHTccccccHHHHHHHHHHHHHHccc## DISOP:02AL 115-117| PSIPRED cccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccc //