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Clostridium perfringens str. 13 (cper0)
Gene : spoIV
DDBJ      :spoIV        stage IV sporulation protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  61/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:378 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   8->374 PF06898 * YqfD 1e-36 35.2 %
:HMM:PFM   2->375 PF06898 * YqfD 4.3e-142 47.7 371/385  
:BLT:SWISS 9->374 YQFD_BACSU 2e-15 24.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81726.1 GT:GENE spoIV GT:PRODUCT stage IV sporulation protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2313145..2314281) GB:FROM 2313145 GB:TO 2314281 GB:DIRECTION - GB:GENE spoIV GB:PRODUCT stage IV sporulation protein GB:NOTE 378 aa, similar to sp:YQFD_BACSU HYPOTHETICAL 45.7 KDA PROTEIN IN RPSU-PHOH INTEREGENIC REGION from Bacillus subtilis (398 aa); 23.8% identity in 366 aa overlap. Also similar to gp:BMAJ4829_4 spoIV gene product from Bacillus megaterium. 1 putative transmembrane region was found by PSORT CPE2020 GB:PROTEIN_ID BAB81726.1 LENGTH 378 SQ:AASEQ MNLEFLKKGQVKVEIKTFDINKLLNVLWRNGINVENVRKIDVVTLTLNVDYSDYGKLKTYVKRLNGKVKIISSKGMIFFLSRAKKSISIFVGVLIFLVGLYIYSGFIWRIDIETKKNIAPFEIRTMLNDFDIKPGVKKSSVNVYGLERKLENGHGDIMWVNARIEGGTLKIKVEEKVSPKIKEENENKEFKNIVASMDGEIKRIYTTSGTAVVKEGDVVKKGDILIIPQQGIEGGEYEVDAEGEVTANTFYEKTIELQVQGKKEERTGEVDSDIYLEIMGKKIYLKKPTKEFDKYDKIESTGKFINRNLYYEKIDKDIVDDKETIINKAVELMKNSINKEISKQSKIVDNIITTEDLGEGKIRLKVLFVVEQNIALSY GT:EXON 1|1-378:0| BL:SWS:NREP 1 BL:SWS:REP 9->374|YQFD_BACSU|2e-15|24.1|361/398| TM:NTM 1 TM:REGION 86->108| SEG 180->193|kikeenenkefkni| SEG 212->223|vvkegdvvkkgd| SEG 313->326|kidkdivddketii| RP:PFM:NREP 1 RP:PFM:REP 8->374|PF06898|1e-36|35.2|364/381|YqfD| HM:PFM:NREP 1 HM:PFM:REP 2->375|PF06898|4.3e-142|47.7|371/385|YqfD| OP:NHOMO 61 OP:NHOMOORG 61 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----1111-1-111111111--1111----------11------------------------------------------------------------------------------------------11111111111111111111111111---1-11---1-111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-3, 178-187| PSIPRED ccccEEEEcEEEEEEEEccHHHHHHHHHHccEEEEEEEEccccEEEEEEEHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHccccEEEHHHEEEEHEEEccEEEEEEEEEcccccHHHHHHHHHHccccccHHHccccHHHHHHHHHHccccEEEEEEEEEccEEEEEEEEcccccccccccccccccEEEEcccEEEEEEEEccEEEEEEccEEccccEEEEcccccccccEEEcccEEEEEEEEEEEEEEEEEcEEEEEEcccEEEEEEEEEccEEEEEEccccccccEEEEEcccEEEEEEEEEEEEHHEEEHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEEccc //