[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : spoVAD
DDBJ      :spoVAD       stage V sporulation protein AD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  79/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:339 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   64->149 3e60A PDBj 5e-04 22.4 %
:HMM:SCOP  60->325 1tedA_ c.95.1.2 * 2.2e-07 21.8 %
:RPS:PFM   9->337 PF07451 * SpoVAD 1e-89 49.2 %
:HMM:PFM   9->337 PF07451 * SpoVAD 1.7e-163 64.4 329/329  
:BLT:SWISS 6->337 SP5AD_BACSU 4e-59 37.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81752.1 GT:GENE spoVAD GT:PRODUCT stage V sporulation protein AD GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2337684..2338703) GB:FROM 2337684 GB:TO 2338703 GB:DIRECTION - GB:GENE spoVAD GB:PRODUCT stage V sporulation protein AD GB:NOTE 339 aa, similar to sp:SP54_BACSU STAGE V SPORULATION PROTEIN AD from Bacillus subtilis (338 aa); 39.2% identity in 332 aa overlap CPE2046 GB:PROTEIN_ID BAB81752.1 LENGTH 339 SQ:AASEQ MSNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAESSLMITAIEGVIKKGNVKEEDVDYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAESLSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQRKEYSQWTVTGSGAMLLGKSGDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLGAVGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLKEKKLKRVLLVSTGALLSSTSALQGESIPGIAHAVAIEYI GT:EXON 1|1-339:0| BL:SWS:NREP 1 BL:SWS:REP 6->337|SP5AD_BACSU|4e-59|37.2|331/100| SEG 201->213|dadnmgaamapaa| SEG 299->322|lkekklkrvllvstgallsstsal| RP:PDB:NREP 1 RP:PDB:REP 64->149|3e60A|5e-04|22.4|85/420| RP:PFM:NREP 1 RP:PFM:REP 9->337|PF07451|1e-89|49.2|329/329|SpoVAD| HM:PFM:NREP 1 HM:PFM:REP 9->337|PF07451|1.7e-163|64.4|329/329|SpoVAD| HM:SCP:REP 60->325|1tedA_|2.2e-07|21.8|248/0|c.95.1.2|1/1|Thiolase-like| OP:NHOMO 113 OP:NHOMOORG 79 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------22122222222223322322111122222211--------22------------------------------------------------------------------------------------------12111111121112111111111111--1111111121111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 85 STR:RPRED 25.1 SQ:SECSTR ###############################################################cccHHHHHHHHHHHHHHcGGGccTTTT#TTTcTTHHHHHccccEEccccGGGHHHHHHHHHHHHHHTTcccEEEEccccHHHHHHH############################################################################################################################################################################################## DISOP:02AL 1-6, 8-9| PSIPRED ccccHHccccEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEHHHHccccHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHcccccHHHcccccccccEEEEEEEEEEEEEcccccEEEEEEccEEEEEcccccccccHHccHHHHHHHHHHHHHccccccEEEEEEEccHHHccHHHHHHHHHHHccccccEEcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHccccccEEEEEEEEEEc //