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Clostridium perfringens str. 13 (cper0)
Gene : spoVD.2
DDBJ      :spoVD        stage V sporulation protein D
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  673/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
e.3.1
:555 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->149 2vxrA PDBj 3e-04 29.7 %
:BLT:PDB   229->548 3eqvB PDBj 6e-16 28.7 %
:RPS:PDB   195->555 2bg1A PDBj 2e-41 15.2 %
:RPS:SCOP  239->547 1mwrA3  e.3.1.1 * 7e-43 23.8 %
:HMM:SCOP  238->557 1qmeA4 e.3.1.1 * 1.7e-60 29.1 %
:RPS:PFM   262->547 PF00905 * Transpeptidase 4e-28 35.3 %
:HMM:PFM   263->548 PF00905 * Transpeptidase 3.7e-50 33.5 272/304  
:HMM:PFM   17->66 PF08391 * Ly49 0.00056 34.0 50/119  
:BLT:SWISS 29->548 SP5D_BACSU 2e-32 30.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81475.1 GT:GENE spoVD.2 GT:PRODUCT stage V sporulation protein D GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2046852..2048519) GB:FROM 2046852 GB:TO 2048519 GB:DIRECTION - GB:GENE spoVD GB:PRODUCT stage V sporulation protein D GB:NOTE 555 aa, similar to gp:AF218835_1 putative penicillin-binding protein from Clostridium perfringens (212 aa); 98.1% identity in 212 aa overlap. Putative N-terminal signal sequence was found by PSORT CPE1769 soprulation specific penicillin-binding protein GB:PROTEIN_ID BAB81475.1 LENGTH 555 SQ:AASEQ MFNRKRKIEIKNRLISLVSLLLLALLLLDMRIYYVQKKYSTKETGNFKGNHKQYENISDLNYSLLDRAGESIFQYETKYKVVIDSMAFRLNNLNQNLENIMAFNYIMQSEDKDFSFDNVVKSGGKLYYDVSKESFDKINSLKNIKGIYTYKAQEKKKDDNWKIENMVTSTKGFALVENKDKKVETKEVDKSEKSLEMVINKELENNKDPKIIFERDHEGLYGEGQYDIPEDNLNVKLTLDNKFQKIVRDVLAKEDYKTFKNAGAVLIDSASGEVLALAQKDESAPNVVLGSGSINGYEAGSIFKILTLEAAMEEKGISLSDKLRCDGLVCKKEKIHGTISIKEAFEVSCNDVFSKLGAQIGTSGLLDFAKEQGVFSLALGLDEKTGMETKGDVPENVSITNLSIGQSMQTSLIQMAGIISTVVNEGEYVEPYILKDFENQKGEVKKEFKELRKNVISKKTAEDLKSVMNSTVLEGTANITKIEGVEIGAKTGTAEALGGELHGWFLGYFKHGEKYYTLGVMVPNIKNVYEDRKPGGGNTAGPIFRDIVLELTKNK GT:EXON 1|1-555:0| BL:SWS:NREP 1 BL:SWS:REP 29->548|SP5D_BACSU|2e-32|30.4|493/646| TM:NTM 1 TM:REGION 13->35| SEG 14->28|lislvsllllallll| SEG 179->194|kdkkvetkevdkseks| BL:PDB:NREP 2 BL:PDB:REP 32->149|2vxrA|3e-04|29.7|111/428| BL:PDB:REP 229->548|3eqvB|6e-16|28.7|296/425| RP:PDB:NREP 1 RP:PDB:REP 195->555|2bg1A|2e-41|15.2|335/455| RP:PFM:NREP 1 RP:PFM:REP 262->547|PF00905|4e-28|35.3|269/289|Transpeptidase| HM:PFM:NREP 2 HM:PFM:REP 263->548|PF00905|3.7e-50|33.5|272/304|Transpeptidase| HM:PFM:REP 17->66|PF08391|0.00056|34.0|50/119|Ly49| GO:PFM:NREP 2 GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| RP:SCP:NREP 1 RP:SCP:REP 239->547|1mwrA3|7e-43|23.8|282/330|e.3.1.1| HM:SCP:REP 238->557|1qmeA4|1.7e-60|29.1|313/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 1270 OP:NHOMOORG 675 OP:PATTERN -------------------------------------------------------------------- 122-232333344533344-423325444442233334332332213221111212-11122232238A83222222212233111111121-1112--22122224221---------------2222222222211111---14132133412----1--111-23231111211211111-1---222236666667676856775245555788353241131122233111111111111111111-121-122111-11111222111-1------2-1-111111212122112122122122222111111111133365333333343332443555334113432333554312235544-1222-----111112111122121-1211111111111-442441411121322211111122213--1112122112-------------12-11--------11222222222222221211-1--1--1-------------------------111111-111-1-111111111-1--1---111111111---133311122221221222223333212211321222212222221-11111112111111---1----11-111111-111111111111----1---1-11111---1-1111111111-11111111111111111111111----111111111111111111111111--1111111111111-------------1--1111-1-1-----11-1111111-----1111-------------1111111111---------11111----------------112222222221121222--------------------------2212122222222 ------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------2------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 472 STR:RPRED 85.0 SQ:SECSTR ###############################HHHHHT##cTTccccTTcccccT####TcEEEEEEcccTTEEEEEGGGTEEEEEEccEEEccccEEEcccccEEEEETTcccccTTccccTTccEEEccccccE#EEEEETTccccEE#############################################HHHHHHHHHHHHTTccTTTTccHHHHHHHHHHHHHTcccEEEEcccHHHHHHHHHHHHHHGGGGccEEEEEEEETTTccEEEEEccccTTTccccTTTTTcccccGGGGHHHHTHHHHHHTTccTTcEEEccccccTTcccccEEEHHHHHHHTccHHHHHHHHHHHHTTccHHHHTHHTTccHTTcccHHHTTccccccccTccHTGGGTTTccccHHHHHHHHHHHHTTTEEcccccEEEEEcTTccEEEEcccccEEcccHHHHHHHHHHHHHHHHTcccHcHHHHTcccEEEEEccTccHTccEEEEEEEcccEEEEEEEEcTTcccccTTGGTTcTTTTHHHHHHHHHHHHHHHHc DISOP:02AL 1-6| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccEEEEEEcccccEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEEccccccccccccHHccccccccHHHHHHHHHHHHccccccccEEEcccEEEccccccccEEHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEEcEEEcccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHcc //