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Clostridium perfringens str. 13 (cper0)
Gene : tktN
DDBJ      :tktN         transketolase N-terminal section
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  868/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.36.1
:274 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->254 1qgdA PDBj 6e-41 38.8 %
:RPS:PDB   5->272 2bfdA PDBj 7e-41 17.0 %
:RPS:SCOP  15->273 1ay0A1  c.36.1.10 * 6e-76 39.2 %
:HMM:SCOP  5->271 1r9jA2 c.36.1.10 * 3.2e-90 35.5 %
:RPS:PFM   11->255 PF00456 * Transketolase_N 4e-58 46.3 %
:HMM:PFM   10->271 PF00456 * Transketolase_N 8.3e-80 40.2 261/333  
:BLT:SWISS 4->270 TKTN_METJA 1e-79 55.6 %
:PROS 16->36|PS00801|TRANSKETOLASE_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80002.1 GT:GENE tktN GT:PRODUCT transketolase N-terminal section GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 376970..377794 GB:FROM 376970 GB:TO 377794 GB:DIRECTION + GB:GENE tktN GB:PRODUCT transketolase N-terminal section GB:NOTE 274 aa, similar to sp:TKTN_METJA PUTATIVE TRANSKETOLASE N-TERMINAL SECTION (EC 2.2.1.1) (TK) from Methanococcus jannaschii (274 aa); 57.7% identity in 267 aa overlap CPE0296 GB:PROTEIN_ID BAB80002.1 LENGTH 274 SQ:AASEQ MSNKIQELKSMSKVIRKDIVTMLTESASGHPGGSLSIADIVTILYFDEMNIDPKNPKDPNRDRFVLSKGHAAPVLYSALARRGYFDPAELTTLRKFGSNLQGHPNMNDLPGIDMSTGSLGQGISAAVGMALAGKLDNKDYRVFTILGDGELEEGQVWEAAMSAAHYRLDNLTAFVDFNGLQIDGDIKEVMSPCPIDKKFEAFGWNVIVINGHDYEEIINAIQKAKSTKGAPTCIVCNTVKGKGVSFMENEAAWHGTAPTKEQCEQAIKEIGGDN GT:EXON 1|1-274:0| BL:SWS:NREP 1 BL:SWS:REP 4->270|TKTN_METJA|1e-79|55.6|266/274| PROS 16->36|PS00801|TRANSKETOLASE_1|PDOC00635| BL:PDB:NREP 1 BL:PDB:REP 9->254|1qgdA|6e-41|38.8|242/662| RP:PDB:NREP 1 RP:PDB:REP 5->272|2bfdA|7e-41|17.0|259/374| RP:PFM:NREP 1 RP:PFM:REP 11->255|PF00456|4e-58|46.3|244/275|Transketolase_N| HM:PFM:NREP 1 HM:PFM:REP 10->271|PF00456|8.3e-80|40.2|261/333|Transketolase_N| RP:SCP:NREP 1 RP:SCP:REP 15->273|1ay0A1|6e-76|39.2|255/335|c.36.1.10| HM:SCP:REP 5->271|1r9jA2|3.2e-90|35.5|265/0|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 2102 OP:NHOMOORG 1097 OP:PATTERN 11-1--1111111111-111111------1-----11111111-----------11-111-111--11 1342522222222222222-2222352222232111337712242242222174522211445234555411111111312111111111122111--11111311131311111111111111122112212132222222231122331131111111211122122222121121111112121111-21122222122122222232221222122211114555441211111111111111111111-11----1--123--1--1-1111112321122-11322223323231111111111111111111222331227222222232322222221122112121211111132222112112132222211111325561132333411111111114-22523522231122212333324427221222323412211111111432112421111111111---------------11112112112111145524323333224433332312433431222242221345133132111221111111111221212121211213111123322232111311211211211111111111111112121122117111123212211121111111121112111231211111143322423334344433-3333344333343333335676321114433333333333333223233331122122222222211121111122222213122233222222211222222111113111111123111221221111111111233333333333433222212212211111131111133--------111----1-11121111111121111111211113121111 11--211-311112122224241333411111111111111111112122234322211111113111111223222-2211111111-2422232545211122211322453321221223233243FQ3-43332224225-2232131141112211-11111411611212111J1111142342422221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 99.3 SQ:SECSTR ##HcHHHHHHHHHHHHHHHHHHHHHHHTTccccccccTTcHHHHHHHHHTccTTcTTcTTTcEEEcccccHHHHHHTTccHHHHHHHHTcTTcTTTTcccccccccTTcTTcccccccTTTHHHHHHHHHHHHHHHTccccEEEEEETTGGGcHHHHHHHHHHHHTTcTcEEEEEEEccEETTEEGGGTccccTTGGGTGGGTcEEEEEETTcHHHHHHHHHHHHHHHHHcEEEEEEcccccccccHHHHHHHTTTcccHHHHHHHHHHHHHHc DISOP:02AL 1-2| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHcccc //