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Clostridium perfringens str. 13 (cper0)
Gene : truA.1
DDBJ      :truA         tRNA-pseudouridine synthase I
Swiss-Prot:TRUA1_CLOPE  RecName: Full=tRNA pseudouridine synthase A 1;         EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I 1;AltName: Full=tRNA pseudouridylate synthase I 1;

Homologs  Archaea  38/68 : Bacteria  877/915 : Eukaryota  133/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:248 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->248 2nqpD PDBj 9e-38 39.8 %
:RPS:PDB   1->248 1dj0A PDBj 8e-75 34.0 %
:RPS:SCOP  1->248 1dj0A  d.265.1.1 * 3e-75 34.0 %
:HMM:SCOP  1->248 1dj0A_ d.265.1.1 * 4.8e-79 45.1 %
:RPS:PFM   6->91 PF01416 * PseudoU_synth_1 1e-05 39.0 %
:RPS:PFM   155->207 PF01416 * PseudoU_synth_1 1e-05 34.0 %
:HMM:PFM   7->108 PF01416 * PseudoU_synth_1 7.9e-15 35.0 80/105  
:HMM:PFM   148->248 PF01416 * PseudoU_synth_1 1.6e-25 40.0 100/105  
:BLT:SWISS 1->248 TRUA1_CLOPE e-133 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80697.1 GT:GENE truA.1 GT:PRODUCT tRNA-pseudouridine synthase I GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1194072..1194818 GB:FROM 1194072 GB:TO 1194818 GB:DIRECTION + GB:GENE truA GB:PRODUCT tRNA-pseudouridine synthase I GB:NOTE 248 aa, similar to sp:TRUA_BACSP TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70) (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE). from Bacillus sp. (strain KSM-64) (244 aa); 46.4% identity in 224 aa overlap. 1 putative transmembrane region was found by PSORT CPE0991 GB:PROTEIN_ID BAB80697.1 LENGTH 248 SQ:AASEQ MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKNYVANFKTNSLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCLLELNY GT:EXON 1|1-248:0| SW:ID TRUA1_CLOPE SW:DE RecName: Full=tRNA pseudouridine synthase A 1; EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I 1;AltName: Full=tRNA pseudouridylate synthase I 1; SW:GN Name=truA1; Synonyms=truA; OrderedLocusNames=CPE0991; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->248|TRUA1_CLOPE|e-133|100.0|248/248| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 225->238|eakerakasekapa| BL:PDB:NREP 1 BL:PDB:REP 4->248|2nqpD|9e-38|39.8|241/263| RP:PDB:NREP 1 RP:PDB:REP 1->248|1dj0A|8e-75|34.0|244/264| RP:PFM:NREP 2 RP:PFM:REP 6->91|PF01416|1e-05|39.0|77/112|PseudoU_synth_1| RP:PFM:REP 155->207|PF01416|1e-05|34.0|53/112|PseudoU_synth_1| HM:PFM:NREP 2 HM:PFM:REP 7->108|PF01416|7.9e-15|35.0|80/105|PseudoU_synth_1| HM:PFM:REP 148->248|PF01416|1.6e-25|40.0|100/105|PseudoU_synth_1| GO:PFM:NREP 8 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| RP:SCP:NREP 1 RP:SCP:REP 1->248|1dj0A|3e-75|34.0|244/264|d.265.1.1| HM:SCP:REP 1->248|1dj0A_|4.8e-79|45.1|244/264|d.265.1.1|1/1|Pseudouridine synthase| OP:NHOMO 1272 OP:NHOMOORG 1048 OP:PATTERN ------------------11-1111---1---1111111111111111111111111111111----- 111-111111111111111-11--1111111111111111-111-1111--11111-1111111111111111111111111111111111111-1111111122111-2-1111111-11111211111111111111111111111111111111111111111111111111111111111111111-111-2222222222222211111122211111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111321122222221211211222232111-321111111121111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111212111111111111111111122221121111111111111111111111111111111111111111111111111111-111111--111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111-11111111111111111111111111111111111-111111111111111111-1111111111111111---1--11----111--1111111111111111 --11321-311-1211----------------------------------------------11111112221111111111111121-1-1-111-------23312-24353423221-232662326D5-33411-233334121123-142333434113211222A11211223A433123124-421222323 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 99.6 SQ:SECSTR cEEEEEEEEEccTTccccccTTT#cTccccHHHHHHHHHHHHHTccccEEEcccccTTcEEEEEEEEEEEcccccHHHHHHHHHHTccTTEEEEEEEEccTTccTTTTccEEEEEEEEEcccccccTTTTccEEccccccHHHHHHHHGGGcEEEEcGGGccTTccccccEEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHHHHHHTTcccTTHHHHHHHHccGGGcccccccTTEEEEEEEc PSIPRED ccEEEEEEEEcccccccEEEccccccccccHHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEcccccccccccccEEEEEEEEccccccHHHccEEEEEcccccHHHHHHHHHHHccccccHHHHcccccccccEEEEEEEEEEEcccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccEEEEEEc //